Analysis of interatomic Contacts of Structural Units in PDB entry:
6KSS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KSS entry

There are 4 chains in PDB entry 6KSS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ASN 838
B	SER 2	ASN 838
C	SER 2	ASN 838
D	SER 2	ASN 838

There are117 helices in PDB entry 6KSS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	29	Right-handed alpha
Helix 2	AA2	A	51	66	Right-handed alpha
Helix 3	AA3	A	75	89	Right-handed alpha
Helix 4	AA4	A	99	103	Right-handed 310
Helix 5	AA5	A	128	140	Right-handed alpha
Helix 6	AA6	A	154	157	Right-handed 310
Helix 7	AA7	A	158	167	Right-handed alpha
Helix 8	AA8	A	180	190	Right-handed alpha
Helix 9	AA9	A	193	204	Right-handed alpha
Helix 10	AB1	A	212	225	Right-handed alpha
Helix 11	AB2	A	243	254	Right-handed alpha
Helix 12	AB3	A	298	319	Right-handed alpha
Helix 13	AB4	A	341	350	Right-handed alpha
Helix 14	AB5	A	445	457	Right-handed alpha
Helix 15	AB6	A	485	489	Right-handed 310
Helix 16	AB7	A	503	510	Right-handed alpha
Helix 17	AB8	A	534	538	Right-handed 310
Helix 18	AB9	A	546	551	Right-handed alpha
Helix 19	AC1	A	551	557	Right-handed alpha
Helix 20	AC2	A	558	561	Right-handed 310
Helix 21	AC3	A	615	635	Right-handed alpha
Helix 22	AC4	A	665	671	Right-handed alpha
Helix 23	AC5	A	682	693	Right-handed alpha
Helix 24	AC6	A	694	698	Right-handed 310
Helix 25	AC7	A	723	733	Right-handed alpha
Helix 26	AC8	A	760	775	Right-handed alpha
Helix 27	AC9	A	775	785	Right-handed alpha
Helix 28	AD1	A	812	838	Right-handed alpha
Helix 29	AD2	B	13	27	Right-handed alpha
Helix 30	AD3	B	27	32	Right-handed alpha
Helix 31	AD4	B	33	38	Right-handed alpha
Helix 32	AD5	B	51	66	Right-handed alpha
Helix 33	AD6	B	75	78	Right-handed 310
Helix 34	AD7	B	79	87	Right-handed alpha
Helix 35	AD8	B	129	140	Right-handed alpha
Helix 36	AD9	B	154	159	Right-handed 310
Helix 37	AE1	B	165	169	Right-handed 310
Helix 38	AE2	B	183	192	Right-handed alpha
Helix 39	AE3	B	193	204	Right-handed alpha
Helix 40	AE4	B	212	226	Right-handed alpha
Helix 41	AE5	B	243	254	Right-handed alpha
Helix 42	AE6	B	297	321	Right-handed alpha
Helix 43	AE7	B	340	352	Right-handed alpha
Helix 44	AE8	B	446	459	Right-handed alpha
Helix 45	AE9	B	482	490	Right-handed alpha
Helix 46	AF1	B	504	509	Right-handed alpha
Helix 47	AF2	B	542	547	Right-handed alpha
Helix 48	AF3	B	548	553	Right-handed alpha
Helix 49	AF4	B	553	561	Right-handed alpha
Helix 50	AF5	B	613	627	Right-handed alpha
Helix 51	AF6	B	629	636	Right-handed alpha
Helix 52	AF7	B	651	656	Right-handed 310
Helix 53	AF8	B	665	675	Right-handed alpha
Helix 54	AF9	B	684	693	Right-handed alpha
Helix 55	AG1	B	694	698	Right-handed 310
Helix 56	AG2	B	706	714	Right-handed alpha
Helix 57	AG3	B	722	733	Right-handed alpha
Helix 58	AG4	B	760	774	Right-handed alpha
Helix 59	AG5	B	775	785	Right-handed alpha
Helix 60	AG6	B	815	838	Right-handed alpha
Helix 61	AG7	C	21	32	Right-handed alpha
Helix 62	AG8	C	51	60	Right-handed alpha
Helix 63	AG9	C	62	66	Right-handed 310
Helix 64	AH1	C	79	86	Right-handed alpha
Helix 65	AH2	C	128	140	Right-handed alpha
Helix 66	AH3	C	160	169	Right-handed alpha
Helix 67	AH4	C	180	190	Right-handed alpha
Helix 68	AH5	C	193	204	Right-handed alpha
Helix 69	AH6	C	214	226	Right-handed alpha
Helix 70	AH7	C	243	252	Right-handed alpha
Helix 71	AH8	C	300	321	Right-handed alpha
Helix 72	AH9	C	341	351	Right-handed alpha
Helix 73	AI1	C	446	456	Right-handed alpha
Helix 74	AI2	C	484	490	Right-handed alpha
Helix 75	AI3	C	503	510	Right-handed alpha
Helix 76	AI4	C	534	538	Right-handed 310
Helix 77	AI5	C	544	560	Right-handed alpha
Helix 78	AI6	C	613	632	Right-handed alpha
Helix 79	AI7	C	633	635	Right-handed 310
Helix 80	AI8	C	651	656	Right-handed 310
Helix 81	AI9	C	665	675	Right-handed alpha
Helix 82	AJ1	C	684	693	Right-handed alpha
Helix 83	AJ2	C	705	711	Right-handed alpha
Helix 84	AJ3	C	712	714	Right-handed 310
Helix 85	AJ4	C	722	731	Right-handed alpha
Helix 86	AJ5	C	760	774	Right-handed alpha
Helix 87	AJ6	C	775	785	Right-handed alpha
Helix 88	AJ7	C	817	838	Right-handed alpha
Helix 89	AJ8	D	14	27	Right-handed alpha
Helix 90	AJ9	D	51	65	Right-handed alpha
Helix 91	AK1	D	75	78	Right-handed 310
Helix 92	AK2	D	79	87	Right-handed alpha
Helix 93	AK3	D	128	138	Right-handed alpha
Helix 94	AK4	D	155	159	Right-handed 310
Helix 95	AK5	D	160	168	Right-handed alpha
Helix 96	AK6	D	180	192	Right-handed alpha
Helix 97	AK7	D	193	204	Right-handed alpha
Helix 98	AK8	D	212	224	Right-handed alpha
Helix 99	AK9	D	243	251	Right-handed alpha
Helix 100	AL1	D	297	320	Right-handed alpha
Helix 101	AL2	D	343	351	Right-handed alpha
Helix 102	AL3	D	446	459	Right-handed alpha
Helix 103	AL4	D	482	490	Right-handed alpha
Helix 104	AL5	D	534	538	Right-handed 310
Helix 105	AL6	D	543	551	Right-handed alpha
Helix 106	AL7	D	551	559	Right-handed alpha
Helix 107	AL8	D	610	631	Right-handed alpha
Helix 108	AL9	D	651	656	Right-handed 310
Helix 109	AM1	D	665	675	Right-handed alpha
Helix 110	AM2	D	684	693	Right-handed alpha
Helix 111	AM3	D	694	698	Right-handed 310
Helix 112	AM4	D	706	714	Right-handed alpha
Helix 113	AM5	D	722	733	Right-handed alpha
Helix 114	AM6	D	760	774	Right-handed alpha
Helix 115	AM7	D	775	785	Right-handed alpha
Helix 116	AM8	D	814	819	Right-handed alpha
Helix 117	AM9	D	821	838	Right-handed alpha

There are 40 sheets in PDB entry 6KSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	39	41	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	11	first strand
Strand 2	A	44	47	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	74	first strand
Strand 2	A	93	97	parallel
Strand 3	A	120	122	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	174	first strand
Strand 2	A	146	147	parallel
Strand 3	A	207	209	parallel
Strand 4	A	234	237	parallel
Strand 5	A	257	263	parallel
Strand 6	A	374	378	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	279	280	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	355	first strand
Strand 2	A	360	362	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	386	387	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	400	402	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	465	first strand
Strand 2	A	419	422	parallel
Strand 3	A	495	496	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	434	first strand
Strand 2	A	442	444	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	512	first strand
Strand 2	A	753	754	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	518	first strand
Strand 2	A	749	750	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	524	first strand
Strand 2	A	719	722	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	10	first strand
Strand 2	B	43	46	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	73	first strand
Strand 2	B	93	96	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	146	149	parallel
Strand 3	B	207	210	parallel
Strand 4	B	235	237	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	263	first strand
Strand 2	B	374	378	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	360	361	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	436	first strand
Strand 2	B	439	444	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	512	first strand
Strand 2	B	753	754	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	517	519	first strand
Strand 2	B	745	750	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	526	first strand
Strand 2	B	738	739	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	661	662	first strand
Strand 2	B	701	702	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	45	47	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	120	122	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	149	first strand
Strand 2	C	174	176	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	235	236	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	356	first strand
Strand 2	C	359	360	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	378	first strand
Strand 2	C	390	396	anti-parallel
Strand 3	C	400	402	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	422	first strand
Strand 2	C	463	465	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	430	432	first strand
Strand 2	C	443	445	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	500	501	first strand
Strand 2	C	750	753	anti-parallel
Strand 3	C	512	513	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	46	first strand
Strand 2	D	4	10	parallel
Strand 3	D	70	74	parallel
Strand 4	D	93	97	parallel
Strand 5	D	120	122	parallel

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There are 8 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	173	first strand
Strand 2	D	144	149	parallel
Strand 3	D	206	210	parallel
Strand 4	D	234	238	parallel
Strand 5	D	257	263	parallel
Strand 6	D	373	379	anti-parallel
Strand 7	D	393	396	anti-parallel
Strand 8	D	400	403	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	432	first strand
Strand 2	D	443	444	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	436	first strand
Strand 2	D	439	440	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	512	first strand
Strand 2	D	753	754	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	519	first strand
Strand 2	D	745	750	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	526	first strand
Strand 2	D	738	739	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	661	662	first strand
Strand 2	D	701	702	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KSS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KSS