Analysis of interatomic Contacts of Structural Units in PDB entry:
6KSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KSV entry

There are 2 chains in PDB entry 6KSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LEU 451
B
 GLU 4LEU 451
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 6KSV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 22Right-handed alpha
Helix 2
AA2
A
64 79Right-handed alpha
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
102 106Right-handed 310
Helix 5
AA5
A
107 113Right-handed alpha
Helix 6
AA6
A
132 141Right-handed alpha
Helix 7
AA7
A
155 170Right-handed alpha
Helix 8
AA8
A
173 182Right-handed alpha
Helix 9
AA9
A
183 187Right-handed 310
Helix 10
AB1
A
228 230Right-handed 310
Helix 11
AB2
A
231 236Right-handed alpha
Helix 12
AB3
A
240 249Right-handed alpha
Helix 13
AB4
A
250 252Right-handed 310
Helix 14
AB5
A
254 258Right-handed 310
Helix 15
AB6
A
260 264Right-handed 310
Helix 16
AB7
A
265 273Right-handed alpha
Helix 17
AB8
A
334 346Right-handed alpha
Helix 18
AB9
A
347 350Right-handed 310
Helix 19
AC1
A
369 373Right-handed 310
Helix 20
AC2
B
5 22Right-handed alpha
Helix 21
AC3
B
64 79Right-handed alpha
Helix 22
AC4
B
87 91Right-handed 310
Helix 23
AC5
B
102 106Right-handed 310
Helix 24
AC6
B
107 113Right-handed alpha
Helix 25
AC7
B
132 141Right-handed alpha
Helix 26
AC8
B
155 170Right-handed alpha
Helix 27
AC9
B
173 182Right-handed alpha
Helix 28
AD1
B
182 187Right-handed alpha
Helix 29
AD2
B
228 230Right-handed 310
Helix 30
AD3
B
231 236Right-handed alpha
Helix 31
AD4
B
240 249Right-handed alpha
Helix 32
AD5
B
250 252Right-handed 310
Helix 33
AD6
B
254 258Right-handed 310
Helix 34
AD7
B
260 264Right-handed 310
Helix 35
AD8
B
265 274Right-handed alpha
Helix 36
AD9
B
334 346Right-handed alpha
Helix 37
AE1
B
347 350Right-handed 310
Helix 38
AE2
B
369 373Right-handed 310
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There are 6 sheets in PDB entry 6KSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 43first strand
Strand 2
A
26 33anti-parallel
Strand 3
A
324 330anti-parallel
Strand 4
A
312 319anti-parallel
Strand 5
A
302 309anti-parallel
Strand 6
A
293 295anti-parallel
Strand 7
A
287 288anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
238 239anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 378first strand
Strand 2
A
381 387anti-parallel
Strand 3
A
393 396anti-parallel
Strand 4
A
403 407anti-parallel
Strand 5
A
412 416anti-parallel
Strand 6
A
425 431anti-parallel
Strand 7
A
438 443anti-parallel
Strand 8
A
446 450anti-parallel
Strand 9
A
374 378anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 43first strand
Strand 2
B
26 33anti-parallel
Strand 3
B
324 330anti-parallel
Strand 4
B
312 319anti-parallel
Strand 5
B
302 309anti-parallel
Strand 6
B
293 295anti-parallel
Strand 7
B
287 288anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
238 239anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 378first strand
Strand 2
B
381 387anti-parallel
Strand 3
B
393 396anti-parallel
Strand 4
B
403 407anti-parallel
Strand 5
B
412 417anti-parallel
Strand 6
B
425 431anti-parallel
Strand 7
B
438 443anti-parallel
Strand 8
B
446 451anti-parallel
Strand 9
B
374 378anti-parallel
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