Analysis of interatomic Contacts of Structural Units in PDB entry:
6KTL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KTL entry

There are 4 chains in PDB entry 6KTL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 6	PHE 372
B	ALA 7	PHE 372
C	LYS 6	LEU 373
D	LYS 6	LEU 373

There are 65 helices in PDB entry 6KTL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	34	Right-handed alpha
Helix 2	AA2	A	47	59	Right-handed alpha
Helix 3	AA3	A	66	73	Right-handed alpha
Helix 4	AA4	A	84	86	Right-handed 310
Helix 5	AA5	A	87	98	Right-handed alpha
Helix 6	AA6	A	111	126	Right-handed alpha
Helix 7	AA7	A	133	137	Right-handed 310
Helix 8	AA8	A	138	150	Right-handed alpha
Helix 9	AA9	A	176	179	Right-handed 310
Helix 10	AB1	A	180	185	Right-handed alpha
Helix 11	AB2	A	187	192	Right-handed alpha
Helix 12	AB3	A	192	205	Right-handed alpha
Helix 13	AB4	A	279	281	Right-handed 310
Helix 14	AB5	A	308	312	Right-handed 310
Helix 15	AB6	A	321	338	Right-handed alpha
Helix 16	AB7	A	346	367	Right-handed alpha
Helix 17	AB8	B	16	34	Right-handed alpha
Helix 18	AB9	B	47	59	Right-handed alpha
Helix 19	AC1	B	66	72	Right-handed alpha
Helix 20	AC2	B	84	86	Right-handed 310
Helix 21	AC3	B	87	98	Right-handed alpha
Helix 22	AC4	B	111	125	Right-handed alpha
Helix 23	AC5	B	133	137	Right-handed 310
Helix 24	AC6	B	138	150	Right-handed alpha
Helix 25	AC7	B	176	179	Right-handed 310
Helix 26	AC8	B	180	185	Right-handed alpha
Helix 27	AC9	B	187	192	Right-handed alpha
Helix 28	AD1	B	192	205	Right-handed alpha
Helix 29	AD2	B	279	281	Right-handed 310
Helix 30	AD3	B	291	295	Right-handed 310
Helix 31	AD4	B	308	312	Right-handed 310
Helix 32	AD5	B	321	338	Right-handed alpha
Helix 33	AD6	B	346	367	Right-handed alpha
Helix 34	AD7	C	16	34	Right-handed alpha
Helix 35	AD8	C	47	59	Right-handed alpha
Helix 36	AD9	C	66	72	Right-handed alpha
Helix 37	AE1	C	84	86	Right-handed 310
Helix 38	AE2	C	87	98	Right-handed alpha
Helix 39	AE3	C	111	126	Right-handed alpha
Helix 40	AE4	C	133	137	Right-handed 310
Helix 41	AE5	C	138	150	Right-handed alpha
Helix 42	AE6	C	176	179	Right-handed 310
Helix 43	AE7	C	180	185	Right-handed alpha
Helix 44	AE8	C	187	192	Right-handed alpha
Helix 45	AE9	C	192	205	Right-handed alpha
Helix 46	AF1	C	279	281	Right-handed 310
Helix 47	AF2	C	308	312	Right-handed 310
Helix 48	AF3	C	321	338	Right-handed alpha
Helix 49	AF4	C	346	367	Right-handed alpha
Helix 50	AF5	D	16	34	Right-handed alpha
Helix 51	AF6	D	47	59	Right-handed alpha
Helix 52	AF7	D	66	73	Right-handed alpha
Helix 53	AF8	D	84	86	Right-handed 310
Helix 54	AF9	D	87	98	Right-handed alpha
Helix 55	AG1	D	111	126	Right-handed alpha
Helix 56	AG2	D	133	137	Right-handed 310
Helix 57	AG3	D	138	150	Right-handed alpha
Helix 58	AG4	D	176	179	Right-handed 310
Helix 59	AG5	D	180	185	Right-handed alpha
Helix 60	AG6	D	187	192	Right-handed alpha
Helix 61	AG7	D	192	205	Right-handed alpha
Helix 62	AG8	D	279	281	Right-handed 310
Helix 63	AG9	D	308	312	Right-handed 310
Helix 64	AH1	D	321	338	Right-handed alpha
Helix 65	AH2	D	346	367	Right-handed alpha

There are 12 sheets in PDB entry 6KTL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	39	44	parallel
Strand 3	A	9	13	parallel
Strand 4	A	78	81	parallel
Strand 5	A	101	104	parallel
Strand 6	A	129	131	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	301	first strand
Strand 2	A	283	287	anti-parallel
Strand 3	A	272	277	anti-parallel
Strand 4	A	262	269	anti-parallel
Strand 5	A	156	164	anti-parallel
Strand 6	A	247	253	parallel
Strand 7	A	235	242	anti-parallel
Strand 8	A	207	215	anti-parallel
Strand 9	A	370	371	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	226	229	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	39	44	parallel
Strand 3	B	9	13	parallel
Strand 4	B	78	81	parallel
Strand 5	B	101	104	parallel
Strand 6	B	129	131	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	301	first strand
Strand 2	B	283	287	anti-parallel
Strand 3	B	273	277	anti-parallel
Strand 4	B	262	269	anti-parallel
Strand 5	B	156	164	anti-parallel
Strand 6	B	247	253	parallel
Strand 7	B	235	242	anti-parallel
Strand 8	B	207	215	anti-parallel
Strand 9	B	370	371	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	226	229	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	39	44	parallel
Strand 3	C	9	13	parallel
Strand 4	C	78	81	parallel
Strand 5	C	101	104	parallel
Strand 6	C	129	131	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	301	first strand
Strand 2	C	283	287	anti-parallel
Strand 3	C	272	277	anti-parallel
Strand 4	C	262	269	anti-parallel
Strand 5	C	156	164	anti-parallel
Strand 6	C	247	253	parallel
Strand 7	C	235	242	anti-parallel
Strand 8	C	207	215	anti-parallel
Strand 9	C	370	371	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	226	229	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	39	44	parallel
Strand 3	D	9	13	parallel
Strand 4	D	78	81	parallel
Strand 5	D	101	104	parallel
Strand 6	D	129	131	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	301	first strand
Strand 2	D	283	287	anti-parallel
Strand 3	D	272	277	anti-parallel
Strand 4	D	262	269	anti-parallel
Strand 5	D	156	164	anti-parallel
Strand 6	D	247	253	parallel
Strand 7	D	235	242	anti-parallel
Strand 8	D	207	215	anti-parallel
Strand 9	D	370	371	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	223	first strand
Strand 2	D	226	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KTL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KTL