Analysis of interatomic Contacts of Structural Units in PDB entry:
6KTO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KTO entry

There are 4 chains in PDB entry 6KTO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 13LYS 209
B
 LEU 9SER 211
C
 THR 2ILE 60
D
 SER 5ASP 52
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6KTO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 35Right-handed alpha
Helix 2
AA2
A
38 40Right-handed 310
Helix 3
AA3
A
57 70Right-handed alpha
Helix 4
AA4
A
71 77Right-handed alpha
Helix 5
AA5
A
116 123Right-handed alpha
Helix 6
AA6
A
123 132Right-handed alpha
Helix 7
AA7
A
132 137Right-handed alpha
Helix 8
AA8
A
156 163Right-handed alpha
Helix 9
AA9
A
175 180Right-handed alpha
Helix 10
AB1
B
10 35Right-handed alpha
Helix 11
AB2
B
38 40Right-handed 310
Helix 12
AB3
B
57 77Right-handed alpha
Helix 13
AB4
B
111 118Right-handed alpha
Helix 14
AB5
B
118 134Right-handed alpha
Helix 15
AB6
C
18 28Right-handed alpha
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There are 6 sheets in PDB entry 6KTO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
50 55anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 152first strand
Strand 2
A
80 88anti-parallel
Strand 3
A
94 103anti-parallel
Strand 4
A
198 206anti-parallel
Strand 5
A
184 193anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 47first strand
Strand 2
B
50 55anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
82 88anti-parallel
Strand 3
B
149 151anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
82 88anti-parallel
Strand 3
B
94 101anti-parallel
Strand 4
B
200 205anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 7first strand
Strand 2
C
4 9parallel
Strand 3
D
37 43anti-parallel
Strand 4
D
48 50anti-parallel
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