Analysis of interatomic Contacts of Structural Units in PDB entry:
6KTQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KTQ entry

There are 2 chains in PDB entry 6KTQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS -20HIS 390
B
 LYS -20HIS 390
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6KTQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 24Right-handed 310
Helix 2
AA2
A
30 45Right-handed alpha
Helix 3
AA3
A
57 73Right-handed alpha
Helix 4
AA4
A
87 97Right-handed alpha
Helix 5
AA5
A
109 116Right-handed alpha
Helix 6
AA6
A
120 138Right-handed alpha
Helix 7
AA7
A
148 152Right-handed 310
Helix 8
AA8
A
153 168Right-handed alpha
Helix 9
AA9
A
182 197Right-handed alpha
Helix 10
AB1
A
212 223Right-handed alpha
Helix 11
AB2
A
231 235Right-handed 310
Helix 12
AB3
A
243 256Right-handed alpha
Helix 13
AB4
A
261 263Right-handed 310
Helix 14
AB5
A
264 277Right-handed alpha
Helix 15
AB6
A
296 306Right-handed alpha
Helix 16
AB7
A
307 310Right-handed 310
Helix 17
AB8
A
314 319Right-handed 310
Helix 18
AB9
A
331 343Right-handed alpha
Helix 19
AC1
A
347 360Right-handed alpha
Helix 20
AC2
A
368 381Right-handed alpha
Helix 21
AC3
B
19 24Right-handed 310
Helix 22
AC4
B
30 45Right-handed alpha
Helix 23
AC5
B
57 73Right-handed alpha
Helix 24
AC6
B
87 97Right-handed alpha
Helix 25
AC7
B
109 116Right-handed alpha
Helix 26
AC8
B
120 138Right-handed alpha
Helix 27
AC9
B
148 152Right-handed 310
Helix 28
AD1
B
153 168Right-handed alpha
Helix 29
AD2
B
182 197Right-handed alpha
Helix 30
AD3
B
212 223Right-handed alpha
Helix 31
AD4
B
231 235Right-handed 310
Helix 32
AD5
B
243 256Right-handed alpha
Helix 33
AD6
B
261 263Right-handed 310
Helix 34
AD7
B
264 277Right-handed alpha
Helix 35
AD8
B
296 306Right-handed alpha
Helix 36
AD9
B
307 310Right-handed 310
Helix 37
AE1
B
314 319Right-handed 310
Helix 38
AE2
B
331 342Right-handed alpha
Helix 39
AE3
B
347 360Right-handed alpha
Helix 40
AE4
B
368 381Right-handed alpha
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There are 4 sheets in PDB entry 6KTQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-14 -12first strand
Strand 2
A
9 15anti-parallel
Strand 3
A
227 230parallel
Strand 4
A
201 206parallel
Strand 5
A
171 176parallel
Strand 6
A
141 147parallel
Strand 7
A
101 107parallel
Strand 8
A
79 84parallel
Strand 9
A
48 52parallel
Strand 10
A
9 15parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
323 324parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-14 -12first strand
Strand 2
B
9 15anti-parallel
Strand 3
B
227 230parallel
Strand 4
B
201 206parallel
Strand 5
B
171 176parallel
Strand 6
B
141 147parallel
Strand 7
B
101 107parallel
Strand 8
B
79 84parallel
Strand 9
B
48 52parallel
Strand 10
B
9 15parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 294first strand
Strand 2
B
323 324parallel
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