Analysis of interatomic Contacts of Structural Units in PDB entry:
6KU1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KU1 entry

There are 6 chains in PDB entry 6KU1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 32VAL 338
A
 VAL 340TYR 411
A
 GLY 413LYS 457
B
 ASP 32VAL 338
B
 VAL 340TYR 411
B
 GLY 413LYS 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6KU1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 43Right-handed alpha
Helix 2
AA2
A
57 63Right-handed alpha
Helix 3
AA3
A
82 88Right-handed 310
Helix 4
AA4
A
90 98Right-handed alpha
Helix 5
AA5
A
112 115Right-handed 310
Helix 6
AA6
A
116 126Right-handed alpha
Helix 7
AA7
A
154 156Right-handed 310
Helix 8
AA8
A
160 169Right-handed alpha
Helix 9
AA9
A
190 196Right-handed alpha
Helix 10
AB1
A
208 210Right-handed 310
Helix 11
AB2
A
220 231Right-handed alpha
Helix 12
AB3
A
254 258Right-handed 310
Helix 13
AB4
A
259 275Right-handed alpha
Helix 14
AB5
A
285 292Right-handed alpha
Helix 15
AB6
A
316 318Right-handed 310
Helix 16
AB7
A
322 332Right-handed alpha
Helix 17
AB8
A
342 347Right-handed alpha
Helix 18
AB9
A
377 381Right-handed 310
Helix 19
AC1
A
389 400Right-handed alpha
Helix 20
AC2
A
415 428Right-handed alpha
Helix 21
AC3
A
438 446Right-handed alpha
Helix 22
AC4
B
37 44Right-handed alpha
Helix 23
AC5
B
57 63Right-handed alpha
Helix 24
AC6
B
82 88Right-handed 310
Helix 25
AC7
B
90 98Right-handed alpha
Helix 26
AC8
B
115 126Right-handed alpha
Helix 27
AC9
B
154 156Right-handed 310
Helix 28
AD1
B
160 169Right-handed alpha
Helix 29
AD2
B
191 196Right-handed alpha
Helix 30
AD3
B
208 210Right-handed 310
Helix 31
AD4
B
220 231Right-handed alpha
Helix 32
AD5
B
254 258Right-handed 310
Helix 33
AD6
B
259 275Right-handed alpha
Helix 34
AD7
B
285 292Right-handed alpha
Helix 35
AD8
B
316 318Right-handed 310
Helix 36
AD9
B
322 330Right-handed alpha
Helix 37
AE1
B
342 347Right-handed alpha
Helix 38
AE2
B
377 381Right-handed 310
Helix 39
AE3
B
389 400Right-handed alpha
Helix 40
AE4
B
415 428Right-handed alpha
Helix 41
AE5
B
438 446Right-handed alpha
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There are 8 sheets in PDB entry 6KU1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 36first strand
Strand 2
A
131 134parallel
Strand 3
A
105 109parallel
Strand 4
A
50 54parallel
Strand 5
A
79 80parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
149 150anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
278 282parallel
Strand 3
A
238 243parallel
Strand 4
A
181 187parallel
Strand 5
A
203 206parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 321first strand
Strand 2
A
433 436parallel
Strand 3
A
407 411parallel
Strand 4
A
335 339parallel
Strand 5
A
366 367parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 35first strand
Strand 2
B
131 134parallel
Strand 3
B
105 109parallel
Strand 4
B
50 54parallel
Strand 5
B
79 80parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 75first strand
Strand 2
B
149 150anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
278 282parallel
Strand 3
B
238 243parallel
Strand 4
B
181 187parallel
Strand 5
B
203 206parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 321first strand
Strand 2
B
433 436parallel
Strand 3
B
407 411parallel
Strand 4
B
335 339parallel
Strand 5
B
366 367parallel
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