Analysis of interatomic Contacts of Structural Units in PDB entry:
6KU6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KU6 entry

There are 2 chains in PDB entry 6KU6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 31	TYR 501
H	ALA 31	TYR 501

There are 34 helices in PDB entry 6KU6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	43	58	Right-handed alpha
Helix 2	AA2	B	73	77	Right-handed 310
Helix 3	AA3	B	86	92	Right-handed alpha
Helix 4	AA4	B	97	110	Right-handed alpha
Helix 5	AA5	B	114	124	Right-handed alpha
Helix 6	AA6	B	124	137	Right-handed alpha
Helix 7	AA7	B	162	182	Right-handed alpha
Helix 8	AA8	B	235	243	Right-handed alpha
Helix 9	AA9	B	244	247	Right-handed 310
Helix 10	AB1	B	259	268	Right-handed alpha
Helix 11	AB2	B	301	306	Right-handed alpha
Helix 12	AB3	B	325	337	Right-handed alpha
Helix 13	AB4	B	349	355	Right-handed alpha
Helix 14	AB5	B	356	366	Right-handed alpha
Helix 15	AB6	B	374	381	Right-handed alpha
Helix 16	AB7	B	386	399	Right-handed alpha
Helix 17	AB8	B	480	499	Right-handed alpha
Helix 18	AB9	H	43	58	Right-handed alpha
Helix 19	AC1	H	73	77	Right-handed 310
Helix 20	AC2	H	86	92	Right-handed alpha
Helix 21	AC3	H	97	110	Right-handed alpha
Helix 22	AC4	H	114	124	Right-handed alpha
Helix 23	AC5	H	124	137	Right-handed alpha
Helix 24	AC6	H	162	182	Right-handed alpha
Helix 25	AC7	H	235	243	Right-handed alpha
Helix 26	AC8	H	244	247	Right-handed 310
Helix 27	AC9	H	259	268	Right-handed alpha
Helix 28	AD1	H	300	306	Right-handed alpha
Helix 29	AD2	H	325	337	Right-handed alpha
Helix 30	AD3	H	349	355	Right-handed alpha
Helix 31	AD4	H	356	366	Right-handed alpha
Helix 32	AD5	H	374	381	Right-handed alpha
Helix 33	AD6	H	386	398	Right-handed alpha
Helix 34	AD7	H	480	499	Right-handed alpha

There are 12 sheets in PDB entry 6KU6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	189	first strand
Strand 2	B	61	64	parallel
Strand 3	B	37	40	parallel
Strand 4	B	224	227	parallel
Strand 5	B	462	464	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	154	156	anti-parallel
Strand 3	B	142	144	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	199	first strand
Strand 2	B	205	211	anti-parallel
Strand 3	B	217	221	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	273	first strand
Strand 2	B	440	442	anti-parallel
Strand 3	B	469	470	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	285	first strand
Strand 2	B	424	437	anti-parallel
Strand 3	B	344	348	anti-parallel
Strand 4	B	309	311	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	285	first strand
Strand 2	B	424	437	anti-parallel
Strand 3	B	369	373	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	186	189	first strand
Strand 2	H	61	64	parallel
Strand 3	H	37	40	parallel
Strand 4	H	224	227	parallel
Strand 5	H	462	464	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	81	82	first strand
Strand 2	H	154	156	anti-parallel
Strand 3	H	142	144	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	193	199	first strand
Strand 2	H	205	211	anti-parallel
Strand 3	H	217	221	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	272	273	first strand
Strand 2	H	440	442	anti-parallel
Strand 3	H	469	470	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	278	285	first strand
Strand 2	H	424	437	anti-parallel
Strand 3	H	344	348	anti-parallel
Strand 4	H	309	311	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	278	285	first strand
Strand 2	H	424	437	anti-parallel
Strand 3	H	369	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KU6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KU6