Analysis of interatomic Contacts of Structural Units in PDB entry:
6KU9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KU9 entry

There are 3 chains in PDB entry 6KU9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 71	LEU 634
B	GLY 71	LEU 634
C	GLY 71	LEU 634

There are 21 helices in PDB entry 6KU9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	182	187	Right-handed alpha
Helix 2	AA2	A	205	216	Right-handed alpha
Helix 3	AA3	A	220	229	Right-handed alpha
Helix 4	AA4	A	474	477	Right-handed 310
Helix 5	AA5	A	482	487	Right-handed alpha
Helix 6	AA6	A	555	560	Right-handed alpha
Helix 7	AA7	A	560	566	Right-handed alpha
Helix 8	AA8	B	182	187	Right-handed alpha
Helix 9	AA9	B	205	216	Right-handed alpha
Helix 10	AB1	B	220	229	Right-handed alpha
Helix 11	AB2	B	474	477	Right-handed 310
Helix 12	AB3	B	482	487	Right-handed alpha
Helix 13	AB4	B	555	560	Right-handed alpha
Helix 14	AB5	B	560	566	Right-handed alpha
Helix 15	AB6	C	182	187	Right-handed alpha
Helix 16	AB7	C	205	216	Right-handed alpha
Helix 17	AB8	C	220	229	Right-handed alpha
Helix 18	AB9	C	474	477	Right-handed 310
Helix 19	AC1	C	482	487	Right-handed alpha
Helix 20	AC2	C	555	560	Right-handed alpha
Helix 21	AC3	C	560	566	Right-handed alpha

There are 30 sheets in PDB entry 6KU9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	77	first strand
Strand 2	A	407	417	anti-parallel
Strand 3	A	100	110	anti-parallel
Strand 4	A	327	332	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	77	first strand
Strand 2	A	407	417	anti-parallel
Strand 3	A	100	110	anti-parallel
Strand 4	A	345	346	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	93	first strand
Strand 2	A	355	361	anti-parallel
Strand 3	A	188	195	anti-parallel
Strand 4	A	199	204	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	173	174	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	158	first strand
Strand 2	A	375	382	anti-parallel
Strand 3	A	387	395	anti-parallel
Strand 4	A	518	523	parallel
Strand 5	A	501	506	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	179	first strand
Strand 2	A	368	371	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	241	first strand
Strand 2	A	307	314	anti-parallel
Strand 3	B	307	314	anti-parallel
Strand 4	B	234	241	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	241	first strand
Strand 2	A	307	314	anti-parallel
Strand 3	C	307	314	anti-parallel
Strand 4	C	234	241	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	241	first strand
Strand 2	B	307	314	anti-parallel
Strand 3	C	307	314	anti-parallel
Strand 4	C	234	241	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	B	492	498	anti-parallel
Strand 3	B	528	534	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	446	first strand
Strand 2	A	621	629	anti-parallel
Strand 3	A	463	472	anti-parallel
Strand 4	A	579	583	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	455	first strand
Strand 2	A	607	612	anti-parallel
Strand 3	A	537	543	anti-parallel
Strand 4	A	553	554	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	528	534	first strand
Strand 2	A	492	498	anti-parallel
Strand 3	C	245	246	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	77	first strand
Strand 2	B	407	417	anti-parallel
Strand 3	B	100	110	anti-parallel
Strand 4	B	327	332	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	77	first strand
Strand 2	B	407	417	anti-parallel
Strand 3	B	100	110	anti-parallel
Strand 4	B	345	346	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	93	first strand
Strand 2	B	355	361	anti-parallel
Strand 3	B	188	195	anti-parallel
Strand 4	B	199	204	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	173	174	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	158	first strand
Strand 2	B	375	382	anti-parallel
Strand 3	B	387	395	anti-parallel
Strand 4	B	518	523	parallel
Strand 5	B	501	506	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	179	first strand
Strand 2	B	368	371	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	C	492	498	anti-parallel
Strand 3	C	528	534	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	446	first strand
Strand 2	B	621	629	anti-parallel
Strand 3	B	463	472	anti-parallel
Strand 4	B	579	583	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	455	first strand
Strand 2	B	607	612	anti-parallel
Strand 3	B	537	543	anti-parallel
Strand 4	B	553	554	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	77	first strand
Strand 2	C	407	417	anti-parallel
Strand 3	C	100	110	anti-parallel
Strand 4	C	327	332	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	77	first strand
Strand 2	C	407	417	anti-parallel
Strand 3	C	100	110	anti-parallel
Strand 4	C	345	346	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	93	first strand
Strand 2	C	355	361	anti-parallel
Strand 3	C	188	195	anti-parallel
Strand 4	C	199	204	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	173	174	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	158	first strand
Strand 2	C	375	382	anti-parallel
Strand 3	C	387	395	anti-parallel
Strand 4	C	518	523	parallel
Strand 5	C	501	506	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	179	first strand
Strand 2	C	368	371	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	446	first strand
Strand 2	C	621	629	anti-parallel
Strand 3	C	463	472	anti-parallel
Strand 4	C	579	583	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	455	first strand
Strand 2	C	607	612	anti-parallel
Strand 3	C	537	543	anti-parallel
Strand 4	C	553	554	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KU9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KU9