Analysis of interatomic Contacts of Structural Units in PDB entry:
6KUE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KUE entry

There are 2 chains in PDB entry 6KUE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2VAL 328
B
 GLN 2VAL 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6KUE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 30Right-handed alpha
Helix 2
AA2
A
34 41Right-handed alpha
Helix 3
AA3
A
53 70Right-handed alpha
Helix 4
AA4
A
72 74Right-handed 310
Helix 5
AA5
A
93 101Right-handed alpha
Helix 6
AA6
A
113 115Right-handed 310
Helix 7
AA7
A
116 133Right-handed alpha
Helix 8
AA8
A
145 148Right-handed 310
Helix 9
AA9
A
152 159Right-handed alpha
Helix 10
AB1
A
187 191Right-handed 310
Helix 11
AB2
A
209 213Right-handed 310
Helix 12
AB3
A
219 242Right-handed alpha
Helix 13
AB4
A
245 249Right-handed 310
Helix 14
AB5
A
258 270Right-handed alpha
Helix 15
AB6
A
272 276Right-handed 310
Helix 16
AB7
A
279 284Right-handed alpha
Helix 17
AB8
A
286 288Right-handed 310
Helix 18
AB9
A
289 302Right-handed alpha
Helix 19
AC1
B
22 30Right-handed alpha
Helix 20
AC2
B
34 41Right-handed alpha
Helix 21
AC3
B
53 70Right-handed alpha
Helix 22
AC4
B
72 74Right-handed 310
Helix 23
AC5
B
93 101Right-handed alpha
Helix 24
AC6
B
113 115Right-handed 310
Helix 25
AC7
B
116 133Right-handed alpha
Helix 26
AC8
B
145 148Right-handed 310
Helix 27
AC9
B
152 159Right-handed alpha
Helix 28
AD1
B
187 190Right-handed 310
Helix 29
AD2
B
209 214Right-handed 310
Helix 30
AD3
B
219 242Right-handed alpha
Helix 31
AD4
B
245 249Right-handed 310
Helix 32
AD5
B
258 270Right-handed alpha
Helix 33
AD6
B
272 276Right-handed 310
Helix 34
AD7
B
279 284Right-handed alpha
Helix 35
AD8
B
286 288Right-handed 310
Helix 36
AD9
B
289 302Right-handed alpha
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There are 7 sheets in PDB entry 6KUE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 14first strand
Strand 2
A
161 171anti-parallel
Strand 3
A
135 143anti-parallel
Strand 4
A
76 82parallel
Strand 5
A
107 112parallel
Strand 6
B
107 112anti-parallel
Strand 7
B
76 82parallel
Strand 8
B
135 143parallel
Strand 9
B
161 171anti-parallel
Strand 10
B
5 14anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
44 47anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 185first strand
Strand 2
A
320 327anti-parallel
Strand 3
A
309 316anti-parallel
Strand 4
A
251 254parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
215 217anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 21first strand
Strand 2
B
44 47anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 185first strand
Strand 2
B
320 327anti-parallel
Strand 3
B
309 316anti-parallel
Strand 4
B
251 254parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
B
216 217anti-parallel
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