Analysis of interatomic Contacts of Structural Units in PDB entry:
6KUK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KUK entry

There are 5 chains in PDB entry 6KUK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 184	GLU 710
B	MET 1	SER 752
C	SER 2	ALA 254
R	C 1	U 8
V	A 1	G 15

There are 60 helices in PDB entry 6KUK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	191	198	Right-handed alpha
Helix 2	AA2	A	207	217	Right-handed alpha
Helix 3	AA3	A	223	234	Right-handed alpha
Helix 4	AA4	A	283	295	Right-handed alpha
Helix 5	AA5	A	296	300	Right-handed 310
Helix 6	AA6	A	312	328	Right-handed alpha
Helix 7	AA7	A	336	343	Right-handed alpha
Helix 8	AA8	A	381	390	Right-handed alpha
Helix 9	AA9	A	416	432	Right-handed alpha
Helix 10	AB1	A	434	457	Right-handed alpha
Helix 11	AB2	A	570	589	Right-handed alpha
Helix 12	AB3	A	619	637	Right-handed alpha
Helix 13	AB4	A	639	661	Right-handed alpha
Helix 14	AB5	A	670	678	Right-handed alpha
Helix 15	AB6	A	684	703	Right-handed alpha
Helix 16	AB7	B	4	11	Right-handed 310
Helix 17	AB8	B	18	22	Right-handed 310
Helix 18	AB9	B	35	49	Right-handed alpha
Helix 19	AC1	B	86	99	Right-handed alpha
Helix 20	AC2	B	104	118	Right-handed alpha
Helix 21	AC3	B	121	127	Right-handed 310
Helix 22	AC4	B	141	157	Right-handed alpha
Helix 23	AC5	B	164	178	Right-handed alpha
Helix 24	AC6	B	216	224	Right-handed alpha
Helix 25	AC7	B	250	268	Right-handed alpha
Helix 26	AC8	B	281	293	Right-handed alpha
Helix 27	AC9	B	310	314	Right-handed 310
Helix 28	AD1	B	316	328	Right-handed alpha
Helix 29	AD2	B	334	339	Right-handed alpha
Helix 30	AD3	B	341	347	Right-handed alpha
Helix 31	AD4	B	378	382	Right-handed 310
Helix 32	AD5	B	383	391	Right-handed alpha
Helix 33	AD6	B	393	397	Right-handed 310
Helix 34	AD7	B	416	425	Right-handed alpha
Helix 35	AD8	B	456	475	Right-handed alpha
Helix 36	AD9	B	510	514	Right-handed 310
Helix 37	AE1	B	523	537	Right-handed alpha
Helix 38	AE2	B	541	561	Right-handed alpha
Helix 39	AE3	B	573	580	Right-handed alpha
Helix 40	AE4	B	581	584	Right-handed 310
Helix 41	AE5	B	586	590	Right-handed 310
Helix 42	AE6	B	591	595	Right-handed 310
Helix 43	AE7	B	608	614	Right-handed alpha
Helix 44	AE8	B	618	626	Right-handed alpha
Helix 45	AE9	B	675	696	Right-handed alpha
Helix 46	AF1	B	710	728	Right-handed alpha
Helix 47	AF2	B	732	752	Right-handed alpha
Helix 48	AF3	C	3	15	Right-handed alpha
Helix 49	AF4	C	30	37	Right-handed alpha
Helix 50	AF5	C	46	56	Right-handed alpha
Helix 51	AF6	C	65	72	Right-handed alpha
Helix 52	AF7	C	99	109	Right-handed alpha
Helix 53	AF8	C	114	122	Right-handed alpha
Helix 54	AF9	C	122	134	Right-handed alpha
Helix 55	AG1	C	164	172	Right-handed alpha
Helix 56	AG2	C	175	179	Right-handed 310
Helix 57	AG3	C	186	197	Right-handed alpha
Helix 58	AG4	C	206	215	Right-handed alpha
Helix 59	AG5	C	232	236	Right-handed 310
Helix 60	AG6	C	238	243	Right-handed alpha

There are 12 sheets in PDB entry 6KUK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	241	first strand
Strand 2	A	666	667	anti-parallel
Strand 3	B	484	486	anti-parallel
Strand 4	B	300	305	anti-parallel
Strand 5	B	448	454	anti-parallel
Strand 6	B	438	443	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	475	478	anti-parallel
Strand 3	A	469	472	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	353	first strand
Strand 2	B	366	370	parallel
Strand 3	B	357	360	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	466	first strand
Strand 2	A	482	485	anti-parallel
Strand 3	A	499	506	anti-parallel
Strand 4	A	543	554	anti-parallel
Strand 5	A	521	527	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	616	618	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	65	66	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	138	140	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	185	first strand
Strand 2	B	210	214	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	350	352	parallel
Strand 4	B	401	403	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	492	first strand
Strand 2	B	497	498	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	664	first strand
Strand 2	C	61	64	anti-parallel
Strand 3	C	94	97	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	153	first strand
Strand 2	C	222	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KUK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KUK