Analysis of interatomic Contacts of Structural Units in PDB entry:
6KUU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KUU entry

There are 5 chains in PDB entry 6KUU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 184	GLU 710
B	MET 1	SER 752
C	SER 2	ALA 254
R	C 1	G 12
V	A 1	G 15

There are 61 helices in PDB entry 6KUU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	191	198	Right-handed alpha
Helix 2	AA2	A	207	217	Right-handed alpha
Helix 3	AA3	A	223	234	Right-handed alpha
Helix 4	AA4	A	283	295	Right-handed alpha
Helix 5	AA5	A	296	300	Right-handed 310
Helix 6	AA6	A	312	328	Right-handed alpha
Helix 7	AA7	A	336	343	Right-handed alpha
Helix 8	AA8	A	381	390	Right-handed alpha
Helix 9	AA9	A	416	432	Right-handed alpha
Helix 10	AB1	A	434	457	Right-handed alpha
Helix 11	AB2	A	557	565	Right-handed alpha
Helix 12	AB3	A	569	589	Right-handed alpha
Helix 13	AB4	A	620	637	Right-handed alpha
Helix 14	AB5	A	639	661	Right-handed alpha
Helix 15	AB6	A	670	678	Right-handed alpha
Helix 16	AB7	A	684	703	Right-handed alpha
Helix 17	AB8	B	4	11	Right-handed 310
Helix 18	AB9	B	18	22	Right-handed 310
Helix 19	AC1	B	35	49	Right-handed alpha
Helix 20	AC2	B	86	99	Right-handed alpha
Helix 21	AC3	B	104	118	Right-handed alpha
Helix 22	AC4	B	121	127	Right-handed 310
Helix 23	AC5	B	141	157	Right-handed alpha
Helix 24	AC6	B	164	178	Right-handed alpha
Helix 25	AC7	B	216	224	Right-handed alpha
Helix 26	AC8	B	250	268	Right-handed alpha
Helix 27	AC9	B	281	292	Right-handed alpha
Helix 28	AD1	B	310	314	Right-handed 310
Helix 29	AD2	B	316	328	Right-handed alpha
Helix 30	AD3	B	333	339	Right-handed alpha
Helix 31	AD4	B	341	347	Right-handed alpha
Helix 32	AD5	B	378	382	Right-handed 310
Helix 33	AD6	B	383	392	Right-handed alpha
Helix 34	AD7	B	393	397	Right-handed 310
Helix 35	AD8	B	416	425	Right-handed alpha
Helix 36	AD9	B	456	475	Right-handed alpha
Helix 37	AE1	B	510	514	Right-handed 310
Helix 38	AE2	B	523	537	Right-handed alpha
Helix 39	AE3	B	541	561	Right-handed alpha
Helix 40	AE4	B	573	580	Right-handed alpha
Helix 41	AE5	B	581	583	Right-handed 310
Helix 42	AE6	B	586	590	Right-handed 310
Helix 43	AE7	B	591	595	Right-handed 310
Helix 44	AE8	B	601	605	Right-handed 310
Helix 45	AE9	B	608	614	Right-handed alpha
Helix 46	AF1	B	618	626	Right-handed alpha
Helix 47	AF2	B	675	696	Right-handed alpha
Helix 48	AF3	B	709	728	Right-handed alpha
Helix 49	AF4	B	732	752	Right-handed alpha
Helix 50	AF5	C	3	15	Right-handed alpha
Helix 51	AF6	C	31	37	Right-handed alpha
Helix 52	AF7	C	46	56	Right-handed alpha
Helix 53	AF8	C	67	72	Right-handed alpha
Helix 54	AF9	C	99	108	Right-handed alpha
Helix 55	AG1	C	114	122	Right-handed alpha
Helix 56	AG2	C	122	134	Right-handed alpha
Helix 57	AG3	C	164	172	Right-handed alpha
Helix 58	AG4	C	186	197	Right-handed alpha
Helix 59	AG5	C	206	215	Right-handed alpha
Helix 60	AG6	C	232	236	Right-handed 310
Helix 61	AG7	C	238	243	Right-handed alpha

There are 12 sheets in PDB entry 6KUU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	475	478	anti-parallel
Strand 3	A	469	472	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	B	366	370	parallel
Strand 3	B	357	360	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	466	first strand
Strand 2	A	482	485	anti-parallel
Strand 3	A	499	506	anti-parallel
Strand 4	A	543	554	anti-parallel
Strand 5	A	524	527	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	604	first strand
Strand 2	A	616	619	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	667	first strand
Strand 2	B	484	486	anti-parallel
Strand 3	B	300	305	anti-parallel
Strand 4	B	448	454	anti-parallel
Strand 5	B	438	443	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	65	66	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	133	first strand
Strand 2	B	138	140	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	185	first strand
Strand 2	B	210	214	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	349	352	parallel
Strand 4	B	401	404	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	492	first strand
Strand 2	B	497	498	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	664	first strand
Strand 2	C	61	64	anti-parallel
Strand 3	C	94	97	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	153	first strand
Strand 2	C	222	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KUU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KUU