Analysis of interatomic Contacts of Structural Units in PDB entry:
6KV5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KV5 entry

There are 3 chains in PDB entry 6KV5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	GLU 710
B	MET 1	SER 752
C	SER 2	SER 752

There are 65 helices in PDB entry 6KV5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	10	Right-handed alpha
Helix 2	AA2	A	16	27	Right-handed alpha
Helix 3	AA3	A	33	49	Right-handed alpha
Helix 4	AA4	A	72	81	Right-handed alpha
Helix 5	AA5	A	113	124	Right-handed alpha
Helix 6	AA6	A	149	169	Right-handed alpha
Helix 7	AA7	A	192	198	Right-handed alpha
Helix 8	AA8	A	207	217	Right-handed alpha
Helix 9	AA9	A	223	234	Right-handed alpha
Helix 10	AB1	A	283	295	Right-handed alpha
Helix 11	AB2	A	312	328	Right-handed alpha
Helix 12	AB3	A	336	342	Right-handed alpha
Helix 13	AB4	A	381	390	Right-handed alpha
Helix 14	AB5	A	416	432	Right-handed alpha
Helix 15	AB6	A	434	457	Right-handed alpha
Helix 16	AB7	A	556	564	Right-handed alpha
Helix 17	AB8	A	569	589	Right-handed alpha
Helix 18	AB9	A	619	637	Right-handed alpha
Helix 19	AC1	A	639	661	Right-handed alpha
Helix 20	AC2	A	671	680	Right-handed alpha
Helix 21	AC3	A	684	703	Right-handed alpha
Helix 22	AC4	B	4	11	Right-handed 310
Helix 23	AC5	B	18	22	Right-handed 310
Helix 24	AC6	B	35	48	Right-handed alpha
Helix 25	AC7	B	86	99	Right-handed alpha
Helix 26	AC8	B	104	116	Right-handed alpha
Helix 27	AC9	B	121	127	Right-handed 310
Helix 28	AD1	B	142	157	Right-handed alpha
Helix 29	AD2	B	165	178	Right-handed alpha
Helix 30	AD3	B	216	224	Right-handed alpha
Helix 31	AD4	B	250	268	Right-handed alpha
Helix 32	AD5	B	281	292	Right-handed alpha
Helix 33	AD6	B	310	314	Right-handed 310
Helix 34	AD7	B	316	328	Right-handed alpha
Helix 35	AD8	B	333	339	Right-handed alpha
Helix 36	AD9	B	341	347	Right-handed alpha
Helix 37	AE1	B	378	382	Right-handed 310
Helix 38	AE2	B	383	392	Right-handed alpha
Helix 39	AE3	B	393	397	Right-handed 310
Helix 40	AE4	B	416	425	Right-handed alpha
Helix 41	AE5	B	456	475	Right-handed alpha
Helix 42	AE6	B	524	538	Right-handed alpha
Helix 43	AE7	B	541	560	Right-handed alpha
Helix 44	AE8	B	573	580	Right-handed alpha
Helix 45	AE9	B	581	584	Right-handed 310
Helix 46	AF1	B	586	590	Right-handed 310
Helix 47	AF2	B	601	605	Right-handed 310
Helix 48	AF3	B	608	614	Right-handed alpha
Helix 49	AF4	B	618	626	Right-handed alpha
Helix 50	AF5	B	679	696	Right-handed alpha
Helix 51	AF6	B	710	728	Right-handed alpha
Helix 52	AF7	B	732	752	Right-handed alpha
Helix 53	AF8	C	6	14	Right-handed alpha
Helix 54	AF9	C	17	24	Right-handed alpha
Helix 55	AG1	C	31	36	Right-handed alpha
Helix 56	AG2	C	46	56	Right-handed alpha
Helix 57	AG3	C	65	72	Right-handed alpha
Helix 58	AG4	C	98	108	Right-handed alpha
Helix 59	AG5	C	114	122	Right-handed alpha
Helix 60	AG6	C	122	134	Right-handed alpha
Helix 61	AG7	C	166	175	Right-handed alpha
Helix 62	AG8	C	186	197	Right-handed alpha
Helix 63	AG9	C	206	218	Right-handed alpha
Helix 64	AH1	C	238	243	Right-handed alpha
Helix 65	AH2	C	723	727	Right-handed 310

There are 14 sheets in PDB entry 6KV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	95	97	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	132	134	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	475	478	anti-parallel
Strand 3	A	469	472	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	352	first strand
Strand 2	B	366	370	parallel
Strand 3	B	357	360	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	466	first strand
Strand 2	A	482	485	anti-parallel
Strand 3	A	499	506	anti-parallel
Strand 4	A	543	554	anti-parallel
Strand 5	A	524	527	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	604	first strand
Strand 2	A	616	618	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	667	first strand
Strand 2	B	484	486	anti-parallel
Strand 3	B	300	307	anti-parallel
Strand 4	B	447	454	anti-parallel
Strand 5	B	438	443	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	65	66	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	138	141	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	181	185	first strand
Strand 2	B	210	214	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	225	230	anti-parallel
Strand 3	B	349	352	parallel
Strand 4	B	401	404	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	664	first strand
Strand 2	C	61	63	anti-parallel
Strand 3	C	95	97	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	153	first strand
Strand 2	C	222	226	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	736	740	first strand
Strand 2	C	744	748	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KV5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KV5