Analysis of interatomic Contacts of Structural Units in PDB entry:
6KVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KVC entry

There is 1 chain in PDB entry 6KVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 13SER 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6KVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
73 78Right-handed alpha
Helix 3
AA3
A
93 98Right-handed 310
Helix 4
AA4
A
99 108Right-handed alpha
Helix 5
AA5
A
108 122Right-handed alpha
Helix 6
AA6
A
133 135Right-handed 310
Helix 7
AA7
A
152 170Right-handed alpha
Helix 8
AA8
A
195 206Right-handed alpha
Helix 9
AA9
A
225 237Right-handed alpha
Helix 10
AB1
A
256 268Right-handed alpha
Helix 11
AB2
A
290 298Right-handed alpha
Helix 12
AB3
A
304 321Right-handed alpha
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There are 4 sheets in PDB entry 6KVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 66first strand
Strand 2
A
39 43parallel
Strand 3
A
14 18parallel
Strand 4
A
81 86parallel
Strand 5
A
125 131parallel
Strand 6
A
177 183parallel
Strand 7
A
244 248parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
223 224parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
273 276parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 221first strand
Strand 2
A
253 255anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il