Analysis of interatomic Contacts of Structural Units in PDB entry:
6KVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KVI entry

There is 1 chain in PDB entry 6KVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13LEU 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6KVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 40Right-handed alpha
Helix 2
AA2
A
55 59Right-handed 310
Helix 3
AA3
A
89 98Right-handed alpha
Helix 4
AA4
A
98 112Right-handed alpha
Helix 5
AA5
A
130 138Right-handed alpha
Helix 6
AA6
A
149 157Right-handed alpha
Helix 7
AA7
A
187 195Right-handed alpha
Helix 8
AA8
A
201 214Right-handed alpha
Helix 9
AA9
A
223 229Right-handed 310
Helix 10
AB1
A
230 238Right-handed alpha
Helix 11
AB2
A
246 250Right-handed 310
Helix 12
AB3
A
253 257Right-handed 310
Helix 13
AB4
A
264 270Right-handed alpha
Helix 14
AB5
A
289 304Right-handed alpha
Helix 15
AB6
A
341 348Right-handed alpha
Helix 16
AB7
A
359 369Right-handed alpha
Helix 17
AB8
A
381 392Right-handed alpha
Helix 18
AB9
A
404 417Right-handed alpha
Helix 19
AC1
A
418 420Right-handed 310
Helix 20
AC2
A
421 439Right-handed alpha
Helix 21
AC3
A
443 458Right-handed alpha
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There are 2 sheets in PDB entry 6KVI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
43 49parallel
Strand 3
A
14 19parallel
Strand 4
A
118 125parallel
Strand 5
A
142 146parallel
Strand 6
A
218 220parallel
Strand 7
A
242 244parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 337first strand
Strand 2
A
306 310parallel
Strand 3
A
277 281parallel
Strand 4
A
351 356parallel
Strand 5
A
373 375parallel
Strand 6
A
396 398parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il