Analysis of interatomic Contacts of Structural Units in PDB entry:
6KVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KVM entry

There are 3 chains in PDB entry 6KVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1GLU 184
B
 ARG 2PRO 190
C
 PRO 1LYS 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6KVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 54Right-handed 310
Helix 2
AA2
A
58 60Right-handed 310
Helix 3
AA3
A
61 80Right-handed alpha
Helix 4
AA4
A
144 146Right-handed 310
Helix 5
AA5
B
51 53Right-handed 310
Helix 6
AA6
B
54 63Right-handed alpha
Helix 7
AA7
B
64 78Right-handed alpha
Helix 8
AA8
B
78 87Right-handed alpha
Helix 9
AA9
B
88 90Right-handed 310
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There are 7 sheets in PDB entry 6KVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
20 29anti-parallel
Strand 4
A
4 16anti-parallel
Strand 5
B
5 18anti-parallel
Strand 6
B
23 32anti-parallel
Strand 7
B
35 41anti-parallel
Strand 8
B
47 49anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
106 115anti-parallel
Strand 3
A
148 156anti-parallel
Strand 4
A
136 137anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
106 115anti-parallel
Strand 3
A
148 156anti-parallel
Strand 4
A
141 142anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
121 126anti-parallel
Strand 3
A
164 169anti-parallel
Strand 4
A
177 181anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 102first strand
Strand 2
B
115 122anti-parallel
Strand 3
B
155 161anti-parallel
Strand 4
B
142 144anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 102first strand
Strand 2
B
115 122anti-parallel
Strand 3
B
155 161anti-parallel
Strand 4
B
148 149anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 138first strand
Strand 2
B
128 133anti-parallel
Strand 3
B
171 176anti-parallel
Strand 4
B
184 188anti-parallel
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