Analysis of interatomic Contacts of Structural Units in PDB entry:
6KVO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KVO entry

There are 6 chains in PDB entry 6KVO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 106ASN 272
B
 GLY 110GLY 268
C
 A 1 T 18
D
 G 1 T 18
E
 A 1 C 18
F
 A 1 T 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6KVO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 165Right-handed alpha
Helix 2
AA2
A
184 205Right-handed alpha
Helix 3
AA3
A
214 221Right-handed alpha
Helix 4
AA4
A
228 241Right-handed alpha
Helix 5
AA5
A
242 249Right-handed 310
Helix 6
AA6
A
250 252Right-handed 310
Helix 7
AA7
A
253 269Right-handed alpha
Helix 8
AA8
B
153 165Right-handed alpha
Helix 9
AA9
B
184 205Right-handed alpha
Helix 10
AB1
B
215 221Right-handed alpha
Helix 11
AB2
B
231 241Right-handed alpha
Helix 12
AB3
B
242 249Right-handed 310
Helix 13
AB4
B
250 252Right-handed 310
Helix 14
AB5
B
253 268Right-handed alpha
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There are 4 sheets in PDB entry 6KVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
122 126anti-parallel
Strand 3
A
112 116anti-parallel
Strand 4
A
171 176parallel
Strand 5
A
208 213parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
A
149 152anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
122 126anti-parallel
Strand 3
B
112 115anti-parallel
Strand 4
B
171 175parallel
Strand 5
B
208 212parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 143first strand
Strand 2
B
148 152anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il