Analysis of interatomic Contacts of Structural Units in PDB entry:
6KVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KVR entry

There are 2 chains in PDB entry 6KVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 571
B
 VAL 3TYR 571
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 6KVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed 310
Helix 2
AA2
A
19 27Right-handed alpha
Helix 3
AA3
A
27 41Right-handed alpha
Helix 4
AA4
A
42 47Right-handed 310
Helix 5
AA5
A
53 60Right-handed alpha
Helix 6
AA6
A
63 71Right-handed alpha
Helix 7
AA7
A
75 83Right-handed alpha
Helix 8
AA8
A
85 95Right-handed alpha
Helix 9
AA9
A
99 119Right-handed alpha
Helix 10
AB1
A
125 144Right-handed alpha
Helix 11
AB2
A
172 176Right-handed 310
Helix 12
AB3
A
184 193Right-handed alpha
Helix 13
AB4
A
204 208Right-handed 310
Helix 14
AB5
A
234 244Right-handed alpha
Helix 15
AB6
A
258 266Right-handed alpha
Helix 16
AB7
A
302 318Right-handed alpha
Helix 17
AB8
A
319 322Right-handed 310
Helix 18
AB9
A
338 341Right-handed 310
Helix 19
AC1
A
356 373Right-handed alpha
Helix 20
AC2
A
384 398Right-handed alpha
Helix 21
AC3
A
401 410Right-handed alpha
Helix 22
AC4
A
416 424Right-handed alpha
Helix 23
AC5
A
433 458Right-handed alpha
Helix 24
AC6
A
481 491Right-handed alpha
Helix 25
AC7
A
511 516Right-handed alpha
Helix 26
AC8
A
521 530Right-handed alpha
Helix 27
AC9
A
531 536Right-handed 310
Helix 28
AD1
A
551 566Right-handed alpha
Helix 29
AD2
B
4 9Right-handed 310
Helix 30
AD3
B
19 27Right-handed alpha
Helix 31
AD4
B
27 42Right-handed alpha
Helix 32
AD5
B
43 47Right-handed 310
Helix 33
AD6
B
53 60Right-handed alpha
Helix 34
AD7
B
63 71Right-handed alpha
Helix 35
AD8
B
75 83Right-handed alpha
Helix 36
AD9
B
85 96Right-handed alpha
Helix 37
AE1
B
99 119Right-handed alpha
Helix 38
AE2
B
125 144Right-handed alpha
Helix 39
AE3
B
172 176Right-handed 310
Helix 40
AE4
B
184 193Right-handed alpha
Helix 41
AE5
B
204 208Right-handed 310
Helix 42
AE6
B
234 244Right-handed alpha
Helix 43
AE7
B
258 266Right-handed alpha
Helix 44
AE8
B
302 316Right-handed alpha
Helix 45
AE9
B
318 322Right-handed 310
Helix 46
AF1
B
338 341Right-handed 310
Helix 47
AF2
B
356 373Right-handed alpha
Helix 48
AF3
B
384 398Right-handed alpha
Helix 49
AF4
B
401 410Right-handed alpha
Helix 50
AF5
B
416 424Right-handed alpha
Helix 51
AF6
B
433 458Right-handed alpha
Helix 52
AF7
B
481 491Right-handed alpha
Helix 53
AF8
B
513 517Right-handed 310
Helix 54
AF9
B
521 529Right-handed alpha
Helix 55
AG1
B
530 531Right-handed 310
Helix 56
AG2
B
532 536Right-handed 310
Helix 57
AG3
B
551 566Right-handed alpha
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There are 4 sheets in PDB entry 6KVR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 124first strand
Strand 2
A
199 201anti-parallel
Strand 3
A
155 158parallel
Strand 4
A
248 253parallel
Strand 5
A
295 300anti-parallel
Strand 6
A
268 271anti-parallel
Strand 7
A
494 502anti-parallel
Strand 8
A
540 546anti-parallel
Strand 9
A
462 466anti-parallel
Strand 10
A
343 346parallel
Strand 11
A
376 379parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
225 229anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 124first strand
Strand 2
B
199 201anti-parallel
Strand 3
B
155 158parallel
Strand 4
B
248 253parallel
Strand 5
B
295 300anti-parallel
Strand 6
B
268 271anti-parallel
Strand 7
B
494 502anti-parallel
Strand 8
B
540 546anti-parallel
Strand 9
B
462 466anti-parallel
Strand 10
B
343 346parallel
Strand 11
B
376 379parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 222first strand
Strand 2
B
225 229anti-parallel
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