Analysis of interatomic Contacts of Structural Units in PDB entry:
6KVS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KVS entry

There are 2 chains in PDB entry 6KVS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 314LYS 626
B
 MET 314LYS 626
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6KVS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
333 338Right-handed 310
Helix 2
AA2
A
342 351Right-handed alpha
Helix 3
AA3
A
363 380Right-handed alpha
Helix 4
AA4
A
382 386Right-handed 310
Helix 5
AA5
A
402 412Right-handed alpha
Helix 6
AA6
A
423 425Right-handed 310
Helix 7
AA7
A
426 441Right-handed alpha
Helix 8
AA8
A
456 459Right-handed 310
Helix 9
AA9
A
463 468Right-handed alpha
Helix 10
AB1
A
497 501Right-handed 310
Helix 11
AB2
A
515 538Right-handed alpha
Helix 12
AB3
A
541 545Right-handed 310
Helix 13
AB4
A
554 566Right-handed alpha
Helix 14
AB5
A
568 572Right-handed 310
Helix 15
AB6
A
575 580Right-handed alpha
Helix 16
AB7
A
582 584Right-handed 310
Helix 17
AB8
A
585 597Right-handed alpha
Helix 18
AB9
B
333 338Right-handed 310
Helix 19
AC1
B
342 351Right-handed alpha
Helix 20
AC2
B
363 380Right-handed alpha
Helix 21
AC3
B
382 386Right-handed 310
Helix 22
AC4
B
402 412Right-handed alpha
Helix 23
AC5
B
423 425Right-handed 310
Helix 24
AC6
B
426 441Right-handed alpha
Helix 25
AC7
B
456 459Right-handed 310
Helix 26
AC8
B
463 468Right-handed alpha
Helix 27
AC9
B
497 501Right-handed 310
Helix 28
AD1
B
515 538Right-handed alpha
Helix 29
AD2
B
541 545Right-handed 310
Helix 30
AD3
B
554 565Right-handed alpha
Helix 31
AD4
B
568 572Right-handed 310
Helix 32
AD5
B
575 580Right-handed alpha
Helix 33
AD6
B
582 584Right-handed 310
Helix 34
AD7
B
585 597Right-handed alpha
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There are 7 sheets in PDB entry 6KVS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 324first strand
Strand 2
A
472 481anti-parallel
Strand 3
A
447 454anti-parallel
Strand 4
A
389 392parallel
Strand 5
A
418 422parallel
Strand 6
B
418 422anti-parallel
Strand 7
B
388 392parallel
Strand 8
B
447 454parallel
Strand 9
B
472 481anti-parallel
Strand 10
B
316 324anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 331first strand
Strand 2
A
354 357anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 495first strand
Strand 2
A
616 623anti-parallel
Strand 3
A
605 612anti-parallel
Strand 4
A
547 550parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 505first strand
Strand 2
A
512 514anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 331first strand
Strand 2
B
354 357anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
487 495first strand
Strand 2
B
616 623anti-parallel
Strand 3
B
605 612anti-parallel
Strand 4
B
547 550parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
503 505first strand
Strand 2
B
512 514anti-parallel
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