Analysis of interatomic Contacts of Structural Units in PDB entry:
6KWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KWS entry

There is 1 chain in PDB entry 6KWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4LYS 342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6KWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
68 75Right-handed alpha
Helix 4
AA4
A
94 99Right-handed alpha
Helix 5
AA5
A
99 118Right-handed alpha
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
135 140Right-handed alpha
Helix 8
AA8
A
155 160Right-handed alpha
Helix 9
AA9
A
162 185Right-handed alpha
Helix 10
AB1
A
206 210Right-handed 310
Helix 11
AB2
A
218 226Right-handed alpha
Helix 12
AB3
A
243 256Right-handed alpha
Helix 13
AB4
A
257 260Right-handed 310
Helix 14
AB5
A
273 284Right-handed alpha
Helix 15
AB6
A
297 307Right-handed alpha
Helix 16
AB7
A
312 320Right-handed alpha
Helix 17
AB8
A
325 341Right-handed alpha
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There are 3 sheets in PDB entry 6KWS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
30 35parallel
Strand 3
A
6 10parallel
Strand 4
A
78 83parallel
Strand 5
A
123 127parallel
Strand 6
A
191 197parallel
Strand 7
A
263 266parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
309 310parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
237 242parallel
Strand 3
A
269 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il