Analysis of interatomic Contacts of Structural Units in PDB entry:
6KXG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KXG entry

There are 4 chains in PDB entry 6KXG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	SER 440
B	ILE 3	PRO 443
C	LYS 2	PHE 439
D	ILE 12	ASP 56

There are 80 helices in PDB entry 6KXG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	27	Right-handed alpha
Helix 2	AA2	A	43	53	Right-handed alpha
Helix 3	AA3	A	65	74	Right-handed alpha
Helix 4	AA4	A	86	90	Right-handed 310
Helix 5	AA5	A	91	99	Right-handed alpha
Helix 6	AA6	A	132	143	Right-handed alpha
Helix 7	AA7	A	154	163	Right-handed alpha
Helix 8	AA8	A	186	202	Right-handed alpha
Helix 9	AA9	A	210	220	Right-handed alpha
Helix 10	AB1	A	229	231	Right-handed 310
Helix 11	AB2	A	232	239	Right-handed alpha
Helix 12	AB3	A	276	284	Right-handed alpha
Helix 13	AB4	A	287	298	Right-handed alpha
Helix 14	AB5	A	305	313	Right-handed alpha
Helix 15	AB6	A	315	328	Right-handed alpha
Helix 16	AB7	A	336	353	Right-handed alpha
Helix 17	AB8	A	357	393	Right-handed alpha
Helix 18	AB9	A	401	409	Right-handed alpha
Helix 19	AC1	A	410	414	Right-handed 310
Helix 20	AC2	A	415	420	Right-handed alpha
Helix 21	AC3	B	17	33	Right-handed alpha
Helix 22	AC4	B	43	53	Right-handed alpha
Helix 23	AC5	B	71	75	Right-handed 310
Helix 24	AC6	B	94	97	Right-handed 310
Helix 25	AC7	B	129	131	Right-handed 310
Helix 26	AC8	B	132	142	Right-handed alpha
Helix 27	AC9	B	154	163	Right-handed alpha
Helix 28	AD1	B	186	202	Right-handed alpha
Helix 29	AD2	B	210	220	Right-handed alpha
Helix 30	AD3	B	229	231	Right-handed 310
Helix 31	AD4	B	232	239	Right-handed alpha
Helix 32	AD5	B	273	284	Right-handed alpha
Helix 33	AD6	B	287	298	Right-handed alpha
Helix 34	AD7	B	305	313	Right-handed alpha
Helix 35	AD8	B	315	328	Right-handed alpha
Helix 36	AD9	B	339	353	Right-handed alpha
Helix 37	AE1	B	357	390	Right-handed alpha
Helix 38	AE2	B	391	393	Right-handed 310
Helix 39	AE3	B	432	439	Right-handed alpha
Helix 40	AE4	C	17	32	Right-handed alpha
Helix 41	AE5	C	43	54	Right-handed alpha
Helix 42	AE6	C	68	74	Right-handed alpha
Helix 43	AE7	C	129	131	Right-handed 310
Helix 44	AE8	C	132	137	Right-handed alpha
Helix 45	AE9	C	138	140	Right-handed 310
Helix 46	AF1	C	154	163	Right-handed alpha
Helix 47	AF2	C	186	202	Right-handed alpha
Helix 48	AF3	C	210	220	Right-handed alpha
Helix 49	AF4	C	232	239	Right-handed alpha
Helix 50	AF5	C	273	284	Right-handed alpha
Helix 51	AF6	C	289	297	Right-handed alpha
Helix 52	AF7	C	308	314	Right-handed alpha
Helix 53	AF8	C	315	328	Right-handed alpha
Helix 54	AF9	C	339	354	Right-handed alpha
Helix 55	AG1	C	357	393	Right-handed alpha
Helix 56	AG2	C	399	409	Right-handed alpha
Helix 57	AG3	C	410	412	Right-handed 310
Helix 58	AG4	C	413	424	Right-handed alpha
Helix 59	AG5	C	431	438	Right-handed alpha
Helix 60	AG6	D	17	23	Right-handed alpha
Helix 61	AG7	D	27	33	Right-handed alpha
Helix 62	AG8	D	66	72	Right-handed 310
Helix 63	AG9	D	83	88	Right-handed alpha
Helix 64	AH1	D	91	98	Right-handed alpha
Helix 65	AH2	D	131	143	Right-handed alpha
Helix 66	AH3	D	154	163	Right-handed alpha
Helix 67	AH4	D	186	202	Right-handed alpha
Helix 68	AH5	D	210	220	Right-handed alpha
Helix 69	AH6	D	229	231	Right-handed 310
Helix 70	AH7	D	232	239	Right-handed alpha
Helix 71	AH8	D	273	284	Right-handed alpha
Helix 72	AH9	D	287	298	Right-handed alpha
Helix 73	AI1	D	305	313	Right-handed alpha
Helix 74	AI2	D	315	327	Right-handed alpha
Helix 75	AI3	D	334	338	Right-handed 310
Helix 76	AI4	D	339	353	Right-handed alpha
Helix 77	AI5	D	357	393	Right-handed alpha
Helix 78	AI6	D	399	402	Right-handed 310
Helix 79	AI7	D	403	408	Right-handed alpha
Helix 80	AI8	D	413	421	Right-handed alpha

There are 19 sheets in PDB entry 6KXG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	8	12	parallel
Strand 3	A	60	64	parallel
Strand 4	A	259	267	anti-parallel
Strand 5	A	107	112	anti-parallel
Strand 6	A	302	303	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	39	first strand
Strand 2	A	8	12	parallel
Strand 3	A	60	64	parallel
Strand 4	A	259	267	anti-parallel
Strand 5	A	329	330	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	148	first strand
Strand 2	A	223	228	parallel
Strand 3	A	115	119	anti-parallel
Strand 4	A	243	246	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	172	first strand
Strand 2	A	177	183	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	254	255	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	11	first strand
Strand 2	B	36	39	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	264	267	anti-parallel
Strand 3	B	107	108	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	103	104	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	302	303	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	148	first strand
Strand 2	B	223	228	parallel
Strand 3	B	115	119	anti-parallel
Strand 4	B	243	246	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	254	255	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	8	11	parallel
Strand 3	C	60	64	parallel
Strand 4	C	259	267	anti-parallel
Strand 5	C	106	112	anti-parallel
Strand 6	C	302	303	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	8	11	parallel
Strand 3	C	60	64	parallel
Strand 4	C	259	267	anti-parallel
Strand 5	C	329	330	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	103	104	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	148	first strand
Strand 2	C	223	228	parallel
Strand 3	C	115	119	anti-parallel
Strand 4	C	243	246	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	64	first strand
Strand 2	D	259	267	anti-parallel
Strand 3	D	106	112	anti-parallel
Strand 4	D	302	303	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	64	first strand
Strand 2	D	259	267	anti-parallel
Strand 3	D	329	330	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	103	104	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	148	first strand
Strand 2	D	223	227	parallel
Strand 3	D	116	119	anti-parallel
Strand 4	D	243	246	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KXG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KXG