Analysis of interatomic Contacts of Structural Units in PDB entry:
6KXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KXM entry

There are 2 chains in PDB entry 6KXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 40LEU 405
B
 SER 40LEU 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6KXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 53Right-handed 310
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
63 67Right-handed 310
Helix 4
AA4
A
95 107Right-handed alpha
Helix 5
AA5
A
124 130Right-handed alpha
Helix 6
AA6
A
131 150Right-handed alpha
Helix 7
AA7
A
174 198Right-handed alpha
Helix 8
AA8
A
211 216Right-handed alpha
Helix 9
AA9
A
218 223Right-handed alpha
Helix 10
AB1
A
266 278Right-handed alpha
Helix 11
AB2
A
280 282Right-handed 310
Helix 12
AB3
A
325 332Right-handed alpha
Helix 13
AB4
A
364 379Right-handed alpha
Helix 14
AB5
A
387 391Right-handed 310
Helix 15
AB6
A
394 405Right-handed alpha
Helix 16
AB7
B
50 53Right-handed 310
Helix 17
AB8
B
58 62Right-handed 310
Helix 18
AB9
B
63 67Right-handed 310
Helix 19
AC1
B
95 107Right-handed alpha
Helix 20
AC2
B
124 130Right-handed alpha
Helix 21
AC3
B
131 150Right-handed alpha
Helix 22
AC4
B
174 198Right-handed alpha
Helix 23
AC5
B
211 216Right-handed alpha
Helix 24
AC6
B
218 226Right-handed alpha
Helix 25
AC7
B
266 278Right-handed alpha
Helix 26
AC8
B
280 282Right-handed 310
Helix 27
AC9
B
325 332Right-handed alpha
Helix 28
AD1
B
364 379Right-handed alpha
Helix 29
AD2
B
387 391Right-handed 310
Helix 30
AD3
B
394 405Right-handed alpha
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There are 4 sheets in PDB entry 6KXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
69 78anti-parallel
Strand 3
A
111 117parallel
Strand 4
A
153 157parallel
Strand 5
A
202 207parallel
Strand 6
A
228 231parallel
Strand 7
A
284 289parallel
Strand 8
A
382 386parallel
Strand 9
A
42 48parallel
Strand 10
A
69 78parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 324first strand
Strand 2
A
291 295anti-parallel
Strand 3
A
358 361anti-parallel
Strand 4
A
348 353anti-parallel
Strand 5
A
338 343anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 84first strand
Strand 2
B
69 78anti-parallel
Strand 3
B
111 118parallel
Strand 4
B
153 158parallel
Strand 5
B
202 208parallel
Strand 6
B
228 232parallel
Strand 7
B
284 286parallel
Strand 8
B
382 385parallel
Strand 9
B
42 48parallel
Strand 10
B
69 78parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 324first strand
Strand 2
B
291 295anti-parallel
Strand 3
B
359 361anti-parallel
Strand 4
B
348 353anti-parallel
Strand 5
B
338 343anti-parallel
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