Analysis of interatomic Contacts of Structural Units in PDB entry:
6KYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KYI entry

There are 4 chains in PDB entry 6KYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 21ALA 464
S
 MET 1PRO 119
B
 TYR 20TRP 462
T
 MET 1PRO 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6KYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 61Right-handed alpha
Helix 2
AA2
A
70 75Right-handed 310
Helix 3
AA3
A
76 80Right-handed 310
Helix 4
AA4
A
104 108Right-handed 310
Helix 5
AA5
A
112 122Right-handed alpha
Helix 6
AA6
A
123 127Right-handed 310
Helix 7
AA7
A
141 146Right-handed alpha
Helix 8
AA8
A
154 163Right-handed alpha
Helix 9
AA9
A
181 195Right-handed alpha
Helix 10
AB1
A
213 233Right-handed alpha
Helix 11
AB2
A
246 261Right-handed alpha
Helix 12
AB3
A
269 273Right-handed alpha
Helix 13
AB4
A
273 288Right-handed alpha
Helix 14
AB5
A
298 303Right-handed alpha
Helix 15
AB6
A
310 322Right-handed alpha
Helix 16
AB7
A
339 351Right-handed alpha
Helix 17
AB8
A
357 361Right-handed 310
Helix 18
AB9
A
383 385Right-handed 310
Helix 19
AC1
A
386 395Right-handed alpha
Helix 20
AC2
A
403 408Right-handed alpha
Helix 21
AC3
A
412 433Right-handed alpha
Helix 22
AC4
A
436 450Right-handed alpha
Helix 23
AC5
A
452 462Right-handed alpha
Helix 24
AC6
S
22 36Right-handed alpha
Helix 25
AC7
S
78 93Right-handed alpha
Helix 26
AC8
B
21 25Right-handed alpha
Helix 27
AC9
B
49 60Right-handed alpha
Helix 28
AD1
B
69 75Right-handed 310
Helix 29
AD2
B
76 80Right-handed 310
Helix 30
AD3
B
104 108Right-handed 310
Helix 31
AD4
B
112 122Right-handed alpha
Helix 32
AD5
B
123 127Right-handed 310
Helix 33
AD6
B
141 146Right-handed alpha
Helix 34
AD7
B
154 163Right-handed alpha
Helix 35
AD8
B
181 195Right-handed alpha
Helix 36
AD9
B
213 233Right-handed alpha
Helix 37
AE1
B
246 261Right-handed alpha
Helix 38
AE2
B
269 273Right-handed alpha
Helix 39
AE3
B
273 288Right-handed alpha
Helix 40
AE4
B
297 303Right-handed alpha
Helix 41
AE5
B
310 322Right-handed alpha
Helix 42
AE6
B
339 351Right-handed alpha
Helix 43
AE7
B
357 361Right-handed 310
Helix 44
AE8
B
383 385Right-handed 310
Helix 45
AE9
B
386 395Right-handed alpha
Helix 46
AF1
B
403 408Right-handed alpha
Helix 47
AF2
B
412 433Right-handed alpha
Helix 48
AF3
B
436 450Right-handed alpha
Helix 49
AF4
B
452 462Right-handed alpha
Helix 50
AF5
T
22 36Right-handed alpha
Helix 51
AF6
T
78 93Right-handed alpha
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There are 8 sheets in PDB entry 6KYI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 89first strand
Strand 2
A
97 103anti-parallel
Strand 3
A
36 44anti-parallel
Strand 4
A
130 139anti-parallel
Strand 5
A
308 309parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
399 401parallel
Strand 3
A
375 378parallel
Strand 4
A
325 329parallel
Strand 5
A
290 294parallel
Strand 6
A
264 268parallel
Strand 7
A
237 241parallel
Strand 8
A
199 201parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
366 367anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
67 69first strand
Strand 2
S
39 45anti-parallel
Strand 3
S
97 104anti-parallel
Strand 4
S
109 117anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 89first strand
Strand 2
B
97 103anti-parallel
Strand 3
B
36 44anti-parallel
Strand 4
B
130 139anti-parallel
Strand 5
B
308 309parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 173first strand
Strand 2
B
199 201parallel
Strand 3
B
237 241parallel
Strand 4
B
264 268parallel
Strand 5
B
290 294parallel
Strand 6
B
325 329parallel
Strand 7
B
375 379parallel
Strand 8
B
399 402parallel
Strand 9
B
169 173parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 354first strand
Strand 2
B
366 367anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
T
67 69first strand
Strand 2
T
39 45anti-parallel
Strand 3
T
97 104anti-parallel
Strand 4
T
109 117anti-parallel
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