Analysis of interatomic Contacts of Structural Units in PDB entry:
6KYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KYK entry

There are 6 chains in PDB entry 6KYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5GLY 363
B
 ALA 6SER 362
C
 PRO -1ARG 167
D
 HIS 0ARG 167
E
 PRO -1ARG 167
F
 HIS 0ARG 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 6KYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 43Right-handed alpha
Helix 2
AA2
A
49 51Right-handed 310
Helix 3
AA3
A
73 77Right-handed 310
Helix 4
AA4
A
103 111Right-handed alpha
Helix 5
AA5
A
112 125Right-handed alpha
Helix 6
AA6
A
127 138Right-handed alpha
Helix 7
AA7
A
151 159Right-handed alpha
Helix 8
AA8
A
162 172Right-handed alpha
Helix 9
AA9
A
185 193Right-handed alpha
Helix 10
AB1
A
195 205Right-handed alpha
Helix 11
AB2
A
218 227Right-handed alpha
Helix 12
AB3
A
230 239Right-handed alpha
Helix 13
AB4
A
252 261Right-handed alpha
Helix 14
AB5
A
262 272Right-handed alpha
Helix 15
AB6
A
285 293Right-handed alpha
Helix 16
AB7
A
295 305Right-handed alpha
Helix 17
AB8
A
318 327Right-handed alpha
Helix 18
AB9
A
328 338Right-handed alpha
Helix 19
AC1
A
339 343Right-handed 310
Helix 20
AC2
B
31 43Right-handed alpha
Helix 21
AC3
B
49 51Right-handed 310
Helix 22
AC4
B
73 77Right-handed 310
Helix 23
AC5
B
103 111Right-handed alpha
Helix 24
AC6
B
112 125Right-handed alpha
Helix 25
AC7
B
127 138Right-handed alpha
Helix 26
AC8
B
151 159Right-handed alpha
Helix 27
AC9
B
162 172Right-handed alpha
Helix 28
AD1
B
185 193Right-handed alpha
Helix 29
AD2
B
195 205Right-handed alpha
Helix 30
AD3
B
218 227Right-handed alpha
Helix 31
AD4
B
230 239Right-handed alpha
Helix 32
AD5
B
252 261Right-handed alpha
Helix 33
AD6
B
262 272Right-handed alpha
Helix 34
AD7
B
285 293Right-handed alpha
Helix 35
AD8
B
295 305Right-handed alpha
Helix 36
AD9
B
318 327Right-handed alpha
Helix 37
AE1
B
328 338Right-handed alpha
Helix 38
AE2
B
339 343Right-handed 310
Helix 39
AE3
C
15 26Right-handed alpha
Helix 40
AE4
C
64 75Right-handed alpha
Helix 41
AE5
C
86 105Right-handed alpha
Helix 42
AE6
C
127 138Right-handed alpha
Helix 43
AE7
C
153 167Right-handed alpha
Helix 44
AE8
D
15 26Right-handed alpha
Helix 45
AE9
D
64 75Right-handed alpha
Helix 46
AF1
D
86 105Right-handed alpha
Helix 47
AF2
D
127 138Right-handed alpha
Helix 48
AF3
D
153 167Right-handed alpha
Helix 49
AF4
E
15 26Right-handed alpha
Helix 50
AF5
E
64 75Right-handed alpha
Helix 51
AF6
E
86 105Right-handed alpha
Helix 52
AF7
E
127 138Right-handed alpha
Helix 53
AF8
E
153 167Right-handed alpha
Helix 54
AF9
F
15 26Right-handed alpha
Helix 55
AG1
F
64 75Right-handed alpha
Helix 56
AG2
F
86 105Right-handed alpha
Helix 57
AG3
F
127 138Right-handed alpha
Helix 58
AG4
F
153 167Right-handed alpha
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There are 4 sheets in PDB entry 6KYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
53 57anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
9 15parallel
Strand 5
A
20 26anti-parallel
Strand 6
C
38 46anti-parallel
Strand 7
C
49 57anti-parallel
Strand 8
C
2 10parallel
Strand 9
C
77 83parallel
Strand 10
C
111 116parallel
Strand 11
C
142 145parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
53 57anti-parallel
Strand 3
B
87 92anti-parallel
Strand 4
B
9 15parallel
Strand 5
B
20 26anti-parallel
Strand 6
E
38 46anti-parallel
Strand 7
E
49 57anti-parallel
Strand 8
E
2 9parallel
Strand 9
E
77 83parallel
Strand 10
E
111 116parallel
Strand 11
E
142 145parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 46first strand
Strand 2
D
49 57anti-parallel
Strand 3
D
2 10parallel
Strand 4
D
77 83parallel
Strand 5
D
111 116parallel
Strand 6
D
142 145parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
38 46first strand
Strand 2
F
49 57anti-parallel
Strand 3
F
2 10parallel
Strand 4
F
77 83parallel
Strand 5
F
111 116parallel
Strand 6
F
142 145parallel
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