Analysis of interatomic Contacts of Structural Units in PDB entry:
6KYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KYL entry

There are 4 chains in PDB entry 6KYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6PRO 74
B
 PRO 0LYS 166
C
 MET 5PRO 74
D
 PRO 0LYS 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 6KYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 12Right-handed 310
Helix 2
AA2
A
13 31Right-handed alpha
Helix 3
AA3
A
42 70Right-handed alpha
Helix 4
AA4
B
14 24Right-handed alpha
Helix 5
AA5
B
132 166Right-handed alpha
Helix 6
AA6
C
10 12Right-handed 310
Helix 7
AA7
C
13 30Right-handed alpha
Helix 8
AA8
C
43 70Right-handed alpha
Helix 9
AA9
D
14 24Right-handed alpha
Helix 10
AB1
D
132 166Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6KYL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 11first strand
Strand 2
B
121 131anti-parallel
Strand 3
B
104 113anti-parallel
Strand 4
B
90 97anti-parallel
Strand 5
B
75 85anti-parallel
Strand 6
B
50 59anti-parallel
Strand 7
B
34 44anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 11first strand
Strand 2
D
120 130anti-parallel
Strand 3
D
105 115anti-parallel
Strand 4
D
90 97anti-parallel
Strand 5
D
75 85anti-parallel
Strand 6
D
50 59anti-parallel
Strand 7
D
34 44anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il