Analysis of interatomic Contacts of Structural Units in PDB entry:
6KYQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KYQ entry

There are 2 chains in PDB entry 6KYQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 380ARG 701
B
 PHE 380ARG 700
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6KYQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
383 389Right-handed alpha
Helix 2
AA2
A
429 443Right-handed alpha
Helix 3
AA3
A
472 479Right-handed alpha
Helix 4
AA4
A
484 505Right-handed alpha
Helix 5
AA5
A
513 515Right-handed 310
Helix 6
AA6
A
555 561Right-handed alpha
Helix 7
AA7
A
567 583Right-handed alpha
Helix 8
AA8
A
595 604Right-handed alpha
Helix 9
AA9
A
617 628Right-handed alpha
Helix 10
AB1
A
637 643Right-handed alpha
Helix 11
AB2
A
644 649Right-handed alpha
Helix 12
AB3
A
661 669Right-handed alpha
Helix 13
AB4
A
682 687Right-handed alpha
Helix 14
AB5
A
688 692Right-handed 310
Helix 15
AB6
B
383 389Right-handed alpha
Helix 16
AB7
B
424 427Right-handed 310
Helix 17
AB8
B
429 443Right-handed alpha
Helix 18
AB9
B
472 479Right-handed alpha
Helix 19
AC1
B
484 505Right-handed alpha
Helix 20
AC2
B
513 515Right-handed 310
Helix 21
AC3
B
555 561Right-handed alpha
Helix 22
AC4
B
567 581Right-handed alpha
Helix 23
AC5
B
595 604Right-handed alpha
Helix 24
AC6
B
617 628Right-handed alpha
Helix 25
AC7
B
637 643Right-handed alpha
Helix 26
AC8
B
644 649Right-handed alpha
Helix 27
AC9
B
661 669Right-handed alpha
Helix 28
AD1
B
682 687Right-handed alpha
Helix 29
AD2
B
688 692Right-handed 310
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There are 6 sheets in PDB entry 6KYQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 398first strand
Strand 2
A
402 409anti-parallel
Strand 3
A
415 422anti-parallel
Strand 4
A
460 466anti-parallel
Strand 5
A
451 456anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
538 539anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 521first strand
Strand 2
A
527 531anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 398first strand
Strand 2
B
403 409anti-parallel
Strand 3
B
415 422anti-parallel
Strand 4
B
460 466anti-parallel
Strand 5
B
451 456anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
507 508first strand
Strand 2
B
538 539anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
517 521first strand
Strand 2
B
527 531anti-parallel
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