Analysis of interatomic Contacts of Structural Units in PDB entry:
6KYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KYU entry

There are 3 chains in PDB entry 6KYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1TRP 271
B
 GLY 1PRO 99
C
 LEU 1LEU 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6KYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 52Right-handed alpha
Helix 2
AA2
A
55 84Right-handed alpha
Helix 3
AA3
A
134 136Right-handed 310
Helix 4
AA4
A
137 146Right-handed alpha
Helix 5
AA5
A
147 160Right-handed alpha
Helix 6
AA6
A
160 173Right-handed alpha
Helix 7
AA7
A
173 178Right-handed alpha
Helix 8
AA8
A
247 252Right-handed 310
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There are 7 sheets in PDB entry 6KYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
92 101anti-parallel
Strand 6
A
107 115anti-parallel
Strand 7
A
118 124anti-parallel
Strand 8
A
129 132anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 191first strand
Strand 2
A
196 205anti-parallel
Strand 3
A
238 246anti-parallel
Strand 4
A
226 227anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 191first strand
Strand 2
A
196 205anti-parallel
Strand 3
A
238 246anti-parallel
Strand 4
A
231 232anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
211 216anti-parallel
Strand 3
A
254 259anti-parallel
Strand 4
A
267 269anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
23 32anti-parallel
Strand 3
B
64 72anti-parallel
Strand 4
B
52 53anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
23 32anti-parallel
Strand 3
B
64 72anti-parallel
Strand 4
B
57 58anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
38 43anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
93 96anti-parallel
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