Analysis of interatomic Contacts of Structural Units in PDB entry:
6KYV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KYV entry

There are 12 chains in PDB entry 6KYV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 1	C 22
B	LYS 242	PHE 918
C	G 1	C 22
D	LYS 242	PHE 918
E	G 1	C 22
F	LYS 242	PHE 918
G	G 1	C 22
H	LYS 242	PHE 918
I	G 1	C 22
J	LYS 242	PHE 918
K	G 1	C 22
L	LYS 242	PHE 918

There are164 helices in PDB entry 6KYV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	244	256	Right-handed alpha
Helix 2	AA2	B	269	282	Right-handed alpha
Helix 3	AA3	B	299	315	Right-handed alpha
Helix 4	AA4	B	333	341	Right-handed alpha
Helix 5	AA5	B	347	358	Right-handed alpha
Helix 6	AA6	B	362	366	Right-handed 310
Helix 7	AA7	B	374	377	Right-handed 310
Helix 8	AA8	B	381	396	Right-handed alpha
Helix 9	AA9	B	419	434	Right-handed alpha
Helix 10	AB1	B	445	451	Right-handed alpha
Helix 11	AB2	B	469	490	Right-handed alpha
Helix 12	AB3	B	492	496	Right-handed 310
Helix 13	AB4	B	506	520	Right-handed alpha
Helix 14	AB5	B	530	558	Right-handed alpha
Helix 15	AB6	B	559	575	Right-handed alpha
Helix 16	AB7	B	581	593	Right-handed alpha
Helix 17	AB8	B	593	602	Right-handed alpha
Helix 18	AB9	B	608	625	Right-handed alpha
Helix 19	AC1	B	636	649	Right-handed alpha
Helix 20	AC2	B	650	654	Right-handed 310
Helix 21	AC3	B	674	683	Right-handed alpha
Helix 22	AC4	B	720	727	Right-handed alpha
Helix 23	AC5	B	728	731	Right-handed 310
Helix 24	AC6	B	744	769	Right-handed alpha
Helix 25	AC7	B	772	793	Right-handed alpha
Helix 26	AC8	B	837	840	Right-handed 310
Helix 27	AC9	B	907	911	Right-handed 310
Helix 28	AD1	D	244	256	Right-handed alpha
Helix 29	AD2	D	269	284	Right-handed alpha
Helix 30	AD3	D	299	315	Right-handed alpha
Helix 31	AD4	D	333	341	Right-handed alpha
Helix 32	AD5	D	347	358	Right-handed alpha
Helix 33	AD6	D	362	366	Right-handed 310
Helix 34	AD7	D	374	377	Right-handed 310
Helix 35	AD8	D	381	396	Right-handed alpha
Helix 36	AD9	D	419	434	Right-handed alpha
Helix 37	AE1	D	445	451	Right-handed alpha
Helix 38	AE2	D	469	488	Right-handed alpha
Helix 39	AE3	D	492	496	Right-handed 310
Helix 40	AE4	D	506	520	Right-handed alpha
Helix 41	AE5	D	529	558	Right-handed alpha
Helix 42	AE6	D	559	575	Right-handed alpha
Helix 43	AE7	D	581	593	Right-handed alpha
Helix 44	AE8	D	593	602	Right-handed alpha
Helix 45	AE9	D	608	625	Right-handed alpha
Helix 46	AF1	D	636	649	Right-handed alpha
Helix 47	AF2	D	650	654	Right-handed 310
Helix 48	AF3	D	674	685	Right-handed alpha
Helix 49	AF4	D	720	727	Right-handed alpha
Helix 50	AF5	D	728	731	Right-handed 310
Helix 51	AF6	D	744	769	Right-handed alpha
Helix 52	AF7	D	772	792	Right-handed alpha
Helix 53	AF8	D	835	840	Right-handed alpha
Helix 54	AF9	D	866	869	Right-handed 310
Helix 55	AG1	D	907	911	Right-handed 310
Helix 56	AG2	F	244	256	Right-handed alpha
Helix 57	AG3	F	269	284	Right-handed alpha
Helix 58	AG4	F	299	315	Right-handed alpha
Helix 59	AG5	F	333	341	Right-handed alpha
Helix 60	AG6	F	347	357	Right-handed alpha
Helix 61	AG7	F	362	366	Right-handed 310
Helix 62	AG8	F	374	377	Right-handed 310
Helix 63	AG9	F	381	396	Right-handed alpha
Helix 64	AH1	F	419	434	Right-handed alpha
Helix 65	AH2	F	445	451	Right-handed alpha
Helix 66	AH3	F	469	488	Right-handed alpha
Helix 67	AH4	F	492	496	Right-handed 310
Helix 68	AH5	F	506	521	Right-handed alpha
Helix 69	AH6	F	529	558	Right-handed alpha
Helix 70	AH7	F	559	575	Right-handed alpha
Helix 71	AH8	F	581	603	Right-handed alpha
Helix 72	AH9	F	608	625	Right-handed alpha
Helix 73	AI1	F	636	649	Right-handed alpha
Helix 74	AI2	F	650	654	Right-handed 310
Helix 75	AI3	F	674	683	Right-handed alpha
Helix 76	AI4	F	720	727	Right-handed alpha
Helix 77	AI5	F	728	731	Right-handed 310
Helix 78	AI6	F	744	769	Right-handed alpha
Helix 79	AI7	F	772	793	Right-handed alpha
Helix 80	AI8	F	837	840	Right-handed 310
Helix 81	AI9	F	866	869	Right-handed 310
Helix 82	AJ1	H	244	256	Right-handed alpha
Helix 83	AJ2	H	269	283	Right-handed alpha
Helix 84	AJ3	H	299	315	Right-handed alpha
Helix 85	AJ4	H	316	318	Right-handed 310
Helix 86	AJ5	H	333	340	Right-handed alpha
Helix 87	AJ6	H	347	358	Right-handed alpha
Helix 88	AJ7	H	362	366	Right-handed 310
Helix 89	AJ8	H	374	377	Right-handed 310
Helix 90	AJ9	H	381	396	Right-handed alpha
Helix 91	AK1	H	419	434	Right-handed alpha
Helix 92	AK2	H	445	453	Right-handed alpha
Helix 93	AK3	H	469	488	Right-handed alpha
Helix 94	AK4	H	492	496	Right-handed 310
Helix 95	AK5	H	506	520	Right-handed alpha
Helix 96	AK6	H	521	523	Right-handed 310
Helix 97	AK7	H	529	558	Right-handed alpha
Helix 98	AK8	H	559	575	Right-handed alpha
Helix 99	AK9	H	581	593	Right-handed alpha
Helix 100	AL1	H	593	603	Right-handed alpha
Helix 101	AL2	H	608	625	Right-handed alpha
Helix 102	AL3	H	636	649	Right-handed alpha
Helix 103	AL4	H	650	654	Right-handed 310
Helix 104	AL5	H	674	684	Right-handed alpha
Helix 105	AL6	H	720	727	Right-handed alpha
Helix 106	AL7	H	728	731	Right-handed 310
Helix 107	AL8	H	744	769	Right-handed alpha
Helix 108	AL9	H	772	792	Right-handed alpha
Helix 109	AM1	H	837	840	Right-handed 310
Helix 110	AM2	H	866	869	Right-handed 310
Helix 111	AM3	H	907	911	Right-handed 310
Helix 112	AM4	J	244	256	Right-handed alpha
Helix 113	AM5	J	269	284	Right-handed alpha
Helix 114	AM6	J	299	315	Right-handed alpha
Helix 115	AM7	J	333	340	Right-handed alpha
Helix 116	AM8	J	347	358	Right-handed alpha
Helix 117	AM9	J	362	366	Right-handed 310
Helix 118	AN1	J	374	377	Right-handed 310
Helix 119	AN2	J	381	396	Right-handed alpha
Helix 120	AN3	J	419	434	Right-handed alpha
Helix 121	AN4	J	445	451	Right-handed alpha
Helix 122	AN5	J	469	488	Right-handed alpha
Helix 123	AN6	J	492	496	Right-handed 310
Helix 124	AN7	J	506	521	Right-handed alpha
Helix 125	AN8	J	530	558	Right-handed alpha
Helix 126	AN9	J	559	572	Right-handed alpha
Helix 127	AO1	J	581	602	Right-handed alpha
Helix 128	AO2	J	608	625	Right-handed alpha
Helix 129	AO3	J	636	650	Right-handed alpha
Helix 130	AO4	J	651	654	Right-handed 310
Helix 131	AO5	J	674	684	Right-handed alpha
Helix 132	AO6	J	720	727	Right-handed alpha
Helix 133	AO7	J	728	731	Right-handed 310
Helix 134	AO8	J	744	770	Right-handed alpha
Helix 135	AO9	J	772	792	Right-handed alpha
Helix 136	AP1	J	837	841	Right-handed alpha
Helix 137	AP2	L	244	252	Right-handed alpha
Helix 138	AP3	L	253	257	Right-handed 310
Helix 139	AP4	L	269	284	Right-handed alpha
Helix 140	AP5	L	299	315	Right-handed alpha
Helix 141	AP6	L	333	340	Right-handed alpha
Helix 142	AP7	L	347	357	Right-handed alpha
Helix 143	AP8	L	362	366	Right-handed 310
Helix 144	AP9	L	374	377	Right-handed 310
Helix 145	AQ1	L	381	396	Right-handed alpha
Helix 146	AQ2	L	419	434	Right-handed alpha
Helix 147	AQ3	L	445	450	Right-handed alpha
Helix 148	AQ4	L	469	488	Right-handed alpha
Helix 149	AQ5	L	492	496	Right-handed 310
Helix 150	AQ6	L	506	520	Right-handed alpha
Helix 151	AQ7	L	529	558	Right-handed alpha
Helix 152	AQ8	L	559	575	Right-handed alpha
Helix 153	AQ9	L	581	602	Right-handed alpha
Helix 154	AR1	L	608	625	Right-handed alpha
Helix 155	AR2	L	636	649	Right-handed alpha
Helix 156	AR3	L	650	654	Right-handed 310
Helix 157	AR4	L	674	684	Right-handed alpha
Helix 158	AR5	L	720	727	Right-handed alpha
Helix 159	AR6	L	728	731	Right-handed 310
Helix 160	AR7	L	744	770	Right-handed alpha
Helix 161	AR8	L	772	792	Right-handed alpha
Helix 162	AR9	L	838	840	Right-handed 310
Helix 163	AS1	L	866	869	Right-handed 310
Helix 164	AS2	L	907	911	Right-handed 310

There are 36 sheets in PDB entry 6KYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	324	first strand
Strand 2	B	343	346	parallel
Strand 3	B	293	296	parallel
Strand 4	B	368	372	parallel
Strand 5	B	404	409	parallel
Strand 6	B	260	263	parallel
Strand 7	B	438	440	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	462	first strand
Strand 2	B	737	742	parallel
Strand 3	B	711	715	parallel
Strand 4	B	630	633	parallel
Strand 5	B	693	696	parallel
Strand 6	B	658	661	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	816	819	first strand
Strand 2	B	806	810	anti-parallel
Strand 3	B	892	896	anti-parallel
Strand 4	B	902	903	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	830	833	first strand
Strand 2	B	823	826	anti-parallel
Strand 3	B	916	917	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	842	846	first strand
Strand 2	B	856	864	anti-parallel
Strand 3	B	852	853	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	842	846	first strand
Strand 2	B	856	864	anti-parallel
Strand 3	B	872	878	anti-parallel
Strand 4	B	883	887	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	324	first strand
Strand 2	D	343	346	parallel
Strand 3	D	293	296	parallel
Strand 4	D	368	372	parallel
Strand 5	D	404	409	parallel
Strand 6	D	260	263	parallel
Strand 7	D	438	440	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	462	first strand
Strand 2	D	737	742	parallel
Strand 3	D	711	715	parallel
Strand 4	D	630	633	parallel
Strand 5	D	693	696	parallel
Strand 6	D	659	661	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	816	819	first strand
Strand 2	D	806	810	anti-parallel
Strand 3	D	892	896	anti-parallel
Strand 4	D	902	903	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	830	833	first strand
Strand 2	D	823	826	anti-parallel
Strand 3	D	916	917	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	842	846	first strand
Strand 2	D	856	864	anti-parallel
Strand 3	D	852	853	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	842	846	first strand
Strand 2	D	856	864	anti-parallel
Strand 3	D	872	878	anti-parallel
Strand 4	D	883	887	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	321	324	first strand
Strand 2	F	343	346	parallel
Strand 3	F	293	296	parallel
Strand 4	F	368	372	parallel
Strand 5	F	404	409	parallel
Strand 6	F	260	263	parallel
Strand 7	F	438	440	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	457	462	first strand
Strand 2	F	737	742	parallel
Strand 3	F	711	715	parallel
Strand 4	F	630	633	parallel
Strand 5	F	693	696	parallel
Strand 6	F	658	661	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	816	819	first strand
Strand 2	F	806	810	anti-parallel
Strand 3	F	892	896	anti-parallel
Strand 4	F	902	903	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	830	833	first strand
Strand 2	F	823	826	anti-parallel
Strand 3	F	916	917	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	842	846	first strand
Strand 2	F	856	864	anti-parallel
Strand 3	F	852	853	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	842	846	first strand
Strand 2	F	856	864	anti-parallel
Strand 3	F	872	877	anti-parallel
Strand 4	F	885	887	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	321	324	first strand
Strand 2	H	343	346	parallel
Strand 3	H	293	296	parallel
Strand 4	H	368	372	parallel
Strand 5	H	404	409	parallel
Strand 6	H	260	263	parallel
Strand 7	H	438	440	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	457	462	first strand
Strand 2	H	737	742	parallel
Strand 3	H	711	715	parallel
Strand 4	H	630	633	parallel
Strand 5	H	693	696	parallel
Strand 6	H	658	661	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	816	819	first strand
Strand 2	H	806	810	anti-parallel
Strand 3	H	892	896	anti-parallel
Strand 4	H	902	904	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	830	833	first strand
Strand 2	H	823	826	anti-parallel
Strand 3	H	916	917	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	842	846	first strand
Strand 2	H	856	864	anti-parallel
Strand 3	H	852	853	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	842	846	first strand
Strand 2	H	856	864	anti-parallel
Strand 3	H	872	878	anti-parallel
Strand 4	H	883	887	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	321	324	first strand
Strand 2	J	343	346	parallel
Strand 3	J	293	296	parallel
Strand 4	J	368	372	parallel
Strand 5	J	404	409	parallel
Strand 6	J	260	263	parallel
Strand 7	J	438	440	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	457	462	first strand
Strand 2	J	737	742	parallel
Strand 3	J	711	715	parallel
Strand 4	J	630	633	parallel
Strand 5	J	693	696	parallel
Strand 6	J	658	661	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	816	819	first strand
Strand 2	J	806	810	anti-parallel
Strand 3	J	892	896	anti-parallel
Strand 4	J	902	904	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	823	826	first strand
Strand 2	J	830	833	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	842	846	first strand
Strand 2	J	856	864	anti-parallel
Strand 3	J	852	853	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	842	846	first strand
Strand 2	J	856	864	anti-parallel
Strand 3	J	872	878	anti-parallel
Strand 4	J	883	887	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	321	324	first strand
Strand 2	L	343	346	parallel
Strand 3	L	293	296	parallel
Strand 4	L	368	372	parallel
Strand 5	L	404	409	parallel
Strand 6	L	260	263	parallel
Strand 7	L	438	440	parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	457	462	first strand
Strand 2	L	737	742	parallel
Strand 3	L	711	715	parallel
Strand 4	L	630	633	parallel
Strand 5	L	693	696	parallel
Strand 6	L	659	661	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	816	819	first strand
Strand 2	L	806	810	anti-parallel
Strand 3	L	892	896	anti-parallel
Strand 4	L	902	904	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	823	826	first strand
Strand 2	L	830	833	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	842	846	first strand
Strand 2	L	856	864	anti-parallel
Strand 3	L	852	853	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	842	846	first strand
Strand 2	L	856	864	anti-parallel
Strand 3	L	872	877	anti-parallel
Strand 4	L	885	887	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KYV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KYV