Analysis of interatomic Contacts of Structural Units in PDB entry:
6KYY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KYY entry

There are 4 chains in PDB entry 6KYY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 5	LYS 441
B	MET 1	LYS 441
C	MET 1	LYS 441
D	LYS 3	LYS 441

There are 63 helices in PDB entry 6KYY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	25	Right-handed alpha
Helix 2	AA2	A	35	39	Right-handed 310
Helix 3	AA3	A	41	47	Right-handed alpha
Helix 4	AA4	A	47	59	Right-handed alpha
Helix 5	AA5	A	63	88	Right-handed alpha
Helix 6	AA6	A	147	152	Right-handed alpha
Helix 7	AA7	A	167	181	Right-handed alpha
Helix 8	AA8	A	198	212	Right-handed alpha
Helix 9	AA9	A	291	295	Right-handed 310
Helix 10	AB1	A	299	316	Right-handed alpha
Helix 11	AB2	A	321	325	Right-handed 310
Helix 12	AB3	A	344	351	Right-handed alpha
Helix 13	AB4	A	365	371	Right-handed alpha
Helix 14	AB5	A	398	412	Right-handed alpha
Helix 15	AB6	A	416	421	Right-handed alpha
Helix 16	AB7	A	431	437	Right-handed alpha
Helix 17	AB8	B	12	25	Right-handed alpha
Helix 18	AB9	B	41	47	Right-handed alpha
Helix 19	AC1	B	47	59	Right-handed alpha
Helix 20	AC2	B	63	88	Right-handed alpha
Helix 21	AC3	B	147	152	Right-handed alpha
Helix 22	AC4	B	167	180	Right-handed alpha
Helix 23	AC5	B	198	212	Right-handed alpha
Helix 24	AC6	B	256	265	Right-handed 310
Helix 25	AC7	B	291	295	Right-handed 310
Helix 26	AC8	B	299	315	Right-handed alpha
Helix 27	AC9	B	321	325	Right-handed 310
Helix 28	AD1	B	344	352	Right-handed alpha
Helix 29	AD2	B	365	371	Right-handed alpha
Helix 30	AD3	B	398	412	Right-handed alpha
Helix 31	AD4	B	416	422	Right-handed alpha
Helix 32	AD5	B	431	437	Right-handed alpha
Helix 33	AD6	B	438	440	Right-handed 310
Helix 34	AD7	C	12	25	Right-handed alpha
Helix 35	AD8	C	41	46	Right-handed alpha
Helix 36	AD9	C	47	60	Right-handed alpha
Helix 37	AE1	C	63	88	Right-handed alpha
Helix 38	AE2	C	147	152	Right-handed alpha
Helix 39	AE3	C	167	181	Right-handed alpha
Helix 40	AE4	C	198	212	Right-handed alpha
Helix 41	AE5	C	256	265	Right-handed 310
Helix 42	AE6	C	291	295	Right-handed 310
Helix 43	AE7	C	299	316	Right-handed alpha
Helix 44	AE8	C	344	352	Right-handed alpha
Helix 45	AE9	C	365	371	Right-handed alpha
Helix 46	AF1	C	398	412	Right-handed alpha
Helix 47	AF2	C	416	421	Right-handed alpha
Helix 48	AF3	C	431	437	Right-handed alpha
Helix 49	AF4	D	12	24	Right-handed alpha
Helix 50	AF5	D	41	46	Right-handed alpha
Helix 51	AF6	D	47	60	Right-handed alpha
Helix 52	AF7	D	64	88	Right-handed alpha
Helix 53	AF8	D	147	153	Right-handed alpha
Helix 54	AF9	D	167	181	Right-handed alpha
Helix 55	AG1	D	198	211	Right-handed alpha
Helix 56	AG2	D	256	260	Right-handed 310
Helix 57	AG3	D	291	295	Right-handed 310
Helix 58	AG4	D	299	315	Right-handed alpha
Helix 59	AG5	D	344	350	Right-handed alpha
Helix 60	AG6	D	365	371	Right-handed alpha
Helix 61	AG7	D	398	412	Right-handed alpha
Helix 62	AG8	D	416	422	Right-handed alpha
Helix 63	AG9	D	431	437	Right-handed alpha

There are 24 sheets in PDB entry 6KYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	96	first strand
Strand 2	A	29	33	parallel
Strand 3	A	6	9	parallel
Strand 4	A	123	125	parallel
Strand 5	A	287	289	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	101	first strand
Strand 2	A	106	109	anti-parallel
Strand 3	A	117	119	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	252	254	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	245	248	parallel
Strand 3	A	160	164	parallel
Strand 4	A	183	187	parallel
Strand 5	A	215	217	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	228	first strand
Strand 2	A	231	235	anti-parallel
Strand 3	A	241	243	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	332	first strand
Strand 2	A	338	342	anti-parallel
Strand 3	A	389	395	anti-parallel
Strand 4	A	377	383	anti-parallel
Strand 5	A	355	361	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	29	33	parallel
Strand 3	B	3	9	parallel
Strand 4	B	116	125	parallel
Strand 5	B	106	109	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	29	33	parallel
Strand 3	B	3	9	parallel
Strand 4	B	116	125	parallel
Strand 5	B	287	289	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	131	first strand
Strand 2	B	252	254	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	B	245	248	parallel
Strand 3	B	160	164	parallel
Strand 4	B	183	187	parallel
Strand 5	B	214	217	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	227	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	240	243	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	332	first strand
Strand 2	B	338	342	anti-parallel
Strand 3	B	389	395	anti-parallel
Strand 4	B	377	383	anti-parallel
Strand 5	B	355	361	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	29	33	parallel
Strand 3	C	3	9	parallel
Strand 4	C	116	125	parallel
Strand 5	C	106	110	anti-parallel
Strand 6	C	98	101	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	96	first strand
Strand 2	C	29	33	parallel
Strand 3	C	3	9	parallel
Strand 4	C	116	125	parallel
Strand 5	C	287	289	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	252	254	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	245	248	parallel
Strand 3	C	160	164	parallel
Strand 4	C	183	187	parallel
Strand 5	C	214	217	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	227	first strand
Strand 2	C	232	235	anti-parallel
Strand 3	C	240	243	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	330	332	first strand
Strand 2	C	338	342	anti-parallel
Strand 3	C	389	395	anti-parallel
Strand 4	C	377	383	anti-parallel
Strand 5	C	355	361	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	96	first strand
Strand 2	D	29	33	parallel
Strand 3	D	6	9	parallel
Strand 4	D	123	125	parallel
Strand 5	D	287	289	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	101	first strand
Strand 2	D	106	110	anti-parallel
Strand 3	D	116	119	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	252	254	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	245	248	parallel
Strand 3	D	160	164	parallel
Strand 4	D	183	187	parallel
Strand 5	D	215	217	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	226	first strand
Strand 2	D	232	235	anti-parallel
Strand 3	D	240	243	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	332	first strand
Strand 2	D	338	342	anti-parallel
Strand 3	D	391	395	anti-parallel
Strand 4	D	377	383	anti-parallel
Strand 5	D	355	361	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KYY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KYY