Analysis of interatomic Contacts of Structural Units in PDB entry:
6KYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KYZ entry

There are 6 chains in PDB entry 6KYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2LYS 181
B
 GLN 3GLY 129
C
 SER 1GLY 107
D
 PHE 6LYS 181
E
 GLN 3GLY 129
F
 SER 1GLY 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6KYZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 14Right-handed alpha
Helix 2
AA2
A
40 42Right-handed 310
Helix 3
AA3
A
86 90Right-handed 310
Helix 4
AA4
A
142 146Right-handed 310
Helix 5
AA5
A
174 178Right-handed 310
Helix 6
AA6
B
30 34Right-handed 310
Helix 7
AA7
B
89 93Right-handed 310
Helix 8
AA8
C
26 30Right-handed 310
Helix 9
AA9
C
78 82Right-handed 310
Helix 10
AB1
D
7 14Right-handed alpha
Helix 11
AB2
D
40 42Right-handed 310
Helix 12
AB3
D
86 90Right-handed 310
Helix 13
AB4
D
142 146Right-handed 310
Helix 14
AB5
D
174 178Right-handed 310
Helix 15
AB6
E
30 34Right-handed 310
Helix 16
AB7
E
89 93Right-handed 310
Helix 17
AB8
F
26 30Right-handed 310
Helix 18
AB9
F
78 82Right-handed 310
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There are 14 sheets in PDB entry 6KYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
23 31anti-parallel
Strand 3
A
34 38anti-parallel
Strand 4
A
69 77anti-parallel
Strand 5
A
52 63anti-parallel
Strand 6
A
46 49anti-parallel
Strand 7
A
15 20anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 126first strand
Strand 2
A
129 138anti-parallel
Strand 3
A
167 172anti-parallel
Strand 4
A
155 163anti-parallel
Strand 5
A
149 152anti-parallel
Strand 6
A
98 105anti-parallel
Strand 7
A
108 117anti-parallel
Strand 8
B
94 107anti-parallel
Strand 9
B
36 41anti-parallel
Strand 10
B
47 53anti-parallel
Strand 11
B
60 62anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
122 126parallel
Strand 3
B
94 107anti-parallel
Strand 4
B
113 118anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
71 75anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
101 105parallel
Strand 3
C
83 91anti-parallel
Strand 4
C
31 37anti-parallel
Strand 5
C
44 47anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
101 105parallel
Strand 3
C
83 91anti-parallel
Strand 4
C
94 97anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 23first strand
Strand 2
C
69 75anti-parallel
Strand 3
C
61 66anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 20first strand
Strand 2
D
23 31anti-parallel
Strand 3
D
34 38anti-parallel
Strand 4
D
69 78anti-parallel
Strand 5
D
52 63anti-parallel
Strand 6
D
46 49anti-parallel
Strand 7
D
15 20anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
113 118first strand
Strand 2
E
94 107anti-parallel
Strand 3
E
122 126anti-parallel
Strand 4
E
12 14parallel
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There are 13 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
113 118first strand
Strand 2
E
94 107anti-parallel
Strand 3
D
108 126anti-parallel
Strand 4
D
129 138anti-parallel
Strand 5
D
167 172anti-parallel
Strand 6
D
155 163anti-parallel
Strand 7
D
149 152anti-parallel
Strand 8
D
98 105anti-parallel
Strand 9
D
108 126anti-parallel
Strand 10
E
94 107anti-parallel
Strand 11
E
36 41anti-parallel
Strand 12
E
47 53anti-parallel
Strand 13
E
60 62anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 9first strand
Strand 2
E
20 27anti-parallel
Strand 3
E
80 85anti-parallel
Strand 4
E
70 75anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
9 12first strand
Strand 2
F
101 105parallel
Strand 3
F
83 91anti-parallel
Strand 4
F
31 37anti-parallel
Strand 5
F
44 47anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
9 12first strand
Strand 2
F
101 105parallel
Strand 3
F
83 91anti-parallel
Strand 4
F
94 97anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
17 23first strand
Strand 2
F
69 75anti-parallel
Strand 3
F
61 66anti-parallel
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