Analysis of interatomic Contacts of Structural Units in PDB entry:
6KZ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KZ3 entry

There are 6 chains in PDB entry 6KZ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 46	LEU 509
B	GLY 46	LEU 509
C	GLY 46	LEU 509
D	GLY 46	LEU 509
E	GLY 46	LEU 509
F	GLY 46	LEU 509

There are 42 helices in PDB entry 6KZ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	123	127	Right-handed 310
Helix 2	AA2	A	209	212	Right-handed 310
Helix 3	AA3	A	243	249	Right-handed alpha
Helix 4	AA4	A	331	335	Right-handed 310
Helix 5	AA5	A	356	361	Right-handed alpha
Helix 6	AA6	A	500	506	Right-handed alpha
Helix 7	AA7	A	507	509	Right-handed 310
Helix 8	AA8	B	123	127	Right-handed 310
Helix 9	AA9	B	209	212	Right-handed 310
Helix 10	AB1	B	243	249	Right-handed alpha
Helix 11	AB2	B	331	335	Right-handed 310
Helix 12	AB3	B	356	361	Right-handed alpha
Helix 13	AB4	B	500	506	Right-handed alpha
Helix 14	AB5	B	507	509	Right-handed 310
Helix 15	AB6	C	123	127	Right-handed 310
Helix 16	AB7	C	209	212	Right-handed 310
Helix 17	AB8	C	243	249	Right-handed alpha
Helix 18	AB9	C	331	335	Right-handed 310
Helix 19	AC1	C	356	361	Right-handed alpha
Helix 20	AC2	C	500	506	Right-handed alpha
Helix 21	AC3	C	507	509	Right-handed 310
Helix 22	AC4	D	123	127	Right-handed 310
Helix 23	AC5	D	209	212	Right-handed 310
Helix 24	AC6	D	243	249	Right-handed alpha
Helix 25	AC7	D	331	335	Right-handed 310
Helix 26	AC8	D	356	361	Right-handed alpha
Helix 27	AC9	D	500	506	Right-handed alpha
Helix 28	AD1	D	507	509	Right-handed 310
Helix 29	AD2	E	123	127	Right-handed 310
Helix 30	AD3	E	209	212	Right-handed 310
Helix 31	AD4	E	243	249	Right-handed alpha
Helix 32	AD5	E	331	335	Right-handed 310
Helix 33	AD6	E	356	361	Right-handed alpha
Helix 34	AD7	E	500	506	Right-handed alpha
Helix 35	AD8	E	507	509	Right-handed 310
Helix 36	AD9	F	123	127	Right-handed 310
Helix 37	AE1	F	209	212	Right-handed 310
Helix 38	AE2	F	243	249	Right-handed alpha
Helix 39	AE3	F	331	335	Right-handed 310
Helix 40	AE4	F	356	361	Right-handed alpha
Helix 41	AE5	F	500	506	Right-handed alpha
Helix 42	AE6	F	507	509	Right-handed 310

There are 36 sheets in PDB entry 6KZ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	71	81	anti-parallel
Strand 3	A	88	92	anti-parallel
Strand 4	A	49	53	anti-parallel
Strand 5	A	144	146	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	110	first strand
Strand 2	A	132	135	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	167	first strand
Strand 2	A	201	207	anti-parallel
Strand 3	A	184	194	anti-parallel
Strand 4	A	178	181	anti-parallel
Strand 5	A	250	253	parallel
Strand 6	A	221	224	anti-parallel
Strand 7	A	267	271	parallel
Strand 8	A	161	167	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	229	first strand
Strand 2	B	238	240	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	F	227	229	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	344	first strand
Strand 2	A	363	367	anti-parallel
Strand 3	A	299	302	parallel
Strand 4	A	305	313	anti-parallel
Strand 5	A	321	327	anti-parallel
Strand 6	A	281	287	anti-parallel
Strand 7	A	376	377	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	399	first strand
Strand 2	A	431	437	anti-parallel
Strand 3	A	416	425	anti-parallel
Strand 4	A	410	413	anti-parallel
Strand 5	A	481	484	parallel
Strand 6	A	450	453	anti-parallel
Strand 7	A	494	498	parallel
Strand 8	A	393	399	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	71	81	anti-parallel
Strand 3	B	88	92	anti-parallel
Strand 4	B	49	53	anti-parallel
Strand 5	B	144	146	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	110	first strand
Strand 2	B	132	135	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	167	first strand
Strand 2	B	201	207	anti-parallel
Strand 3	B	184	194	anti-parallel
Strand 4	B	178	181	anti-parallel
Strand 5	B	250	253	parallel
Strand 6	B	221	224	anti-parallel
Strand 7	B	267	271	parallel
Strand 8	B	161	167	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	C	238	240	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	344	first strand
Strand 2	B	363	367	anti-parallel
Strand 3	B	299	302	parallel
Strand 4	B	305	313	anti-parallel
Strand 5	B	321	327	anti-parallel
Strand 6	B	281	287	anti-parallel
Strand 7	B	376	377	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	399	first strand
Strand 2	B	431	437	anti-parallel
Strand 3	B	416	425	anti-parallel
Strand 4	B	410	413	anti-parallel
Strand 5	B	481	484	parallel
Strand 6	B	450	453	anti-parallel
Strand 7	B	494	498	parallel
Strand 8	B	393	399	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	71	81	anti-parallel
Strand 3	C	88	92	anti-parallel
Strand 4	C	49	53	anti-parallel
Strand 5	C	144	146	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	110	first strand
Strand 2	C	132	135	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	167	first strand
Strand 2	C	201	207	anti-parallel
Strand 3	C	184	194	anti-parallel
Strand 4	C	178	181	anti-parallel
Strand 5	C	250	253	parallel
Strand 6	C	221	224	anti-parallel
Strand 7	C	267	271	parallel
Strand 8	C	161	167	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	229	first strand
Strand 2	D	238	240	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	344	first strand
Strand 2	C	363	367	anti-parallel
Strand 3	C	299	302	parallel
Strand 4	C	305	313	anti-parallel
Strand 5	C	321	327	anti-parallel
Strand 6	C	281	287	anti-parallel
Strand 7	C	376	377	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	399	first strand
Strand 2	C	431	437	anti-parallel
Strand 3	C	416	425	anti-parallel
Strand 4	C	410	413	anti-parallel
Strand 5	C	481	484	parallel
Strand 6	C	450	453	anti-parallel
Strand 7	C	494	498	parallel
Strand 8	C	393	399	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	68	first strand
Strand 2	D	71	81	anti-parallel
Strand 3	D	88	92	anti-parallel
Strand 4	D	49	53	anti-parallel
Strand 5	D	144	146	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	110	first strand
Strand 2	D	132	135	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	167	first strand
Strand 2	D	201	207	anti-parallel
Strand 3	D	184	194	anti-parallel
Strand 4	D	178	181	anti-parallel
Strand 5	D	250	253	parallel
Strand 6	D	221	224	anti-parallel
Strand 7	D	267	271	parallel
Strand 8	D	161	167	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	229	first strand
Strand 2	E	238	240	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	344	first strand
Strand 2	D	363	367	anti-parallel
Strand 3	D	299	302	parallel
Strand 4	D	305	313	anti-parallel
Strand 5	D	321	327	anti-parallel
Strand 6	D	281	287	anti-parallel
Strand 7	D	376	377	parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	399	first strand
Strand 2	D	431	437	anti-parallel
Strand 3	D	416	425	anti-parallel
Strand 4	D	410	413	anti-parallel
Strand 5	D	481	484	parallel
Strand 6	D	450	453	anti-parallel
Strand 7	D	494	498	parallel
Strand 8	D	393	399	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	68	first strand
Strand 2	E	71	81	anti-parallel
Strand 3	E	88	92	anti-parallel
Strand 4	E	49	53	anti-parallel
Strand 5	E	144	146	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	110	first strand
Strand 2	E	132	135	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	167	first strand
Strand 2	E	201	207	anti-parallel
Strand 3	E	184	194	anti-parallel
Strand 4	E	178	181	anti-parallel
Strand 5	E	250	253	parallel
Strand 6	E	221	224	anti-parallel
Strand 7	E	267	271	parallel
Strand 8	E	161	167	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	229	first strand
Strand 2	F	238	240	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	344	first strand
Strand 2	E	363	367	anti-parallel
Strand 3	E	299	302	parallel
Strand 4	E	305	313	anti-parallel
Strand 5	E	321	327	anti-parallel
Strand 6	E	281	287	anti-parallel
Strand 7	E	376	377	parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	393	399	first strand
Strand 2	E	431	437	anti-parallel
Strand 3	E	416	425	anti-parallel
Strand 4	E	410	413	anti-parallel
Strand 5	E	481	484	parallel
Strand 6	E	450	453	anti-parallel
Strand 7	E	494	498	parallel
Strand 8	E	393	399	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	68	first strand
Strand 2	F	71	81	anti-parallel
Strand 3	F	88	92	anti-parallel
Strand 4	F	49	53	anti-parallel
Strand 5	F	144	146	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	107	110	first strand
Strand 2	F	132	135	anti-parallel

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There are 8 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	167	first strand
Strand 2	F	201	207	anti-parallel
Strand 3	F	184	194	anti-parallel
Strand 4	F	178	181	anti-parallel
Strand 5	F	250	253	parallel
Strand 6	F	221	224	anti-parallel
Strand 7	F	267	271	parallel
Strand 8	F	161	167	parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	340	344	first strand
Strand 2	F	363	367	anti-parallel
Strand 3	F	299	302	parallel
Strand 4	F	305	313	anti-parallel
Strand 5	F	321	327	anti-parallel
Strand 6	F	281	287	anti-parallel
Strand 7	F	376	377	parallel

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There are 8 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	393	399	first strand
Strand 2	F	431	437	anti-parallel
Strand 3	F	416	425	anti-parallel
Strand 4	F	410	413	anti-parallel
Strand 5	F	481	484	parallel
Strand 6	F	450	453	anti-parallel
Strand 7	F	494	498	parallel
Strand 8	F	393	399	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KZ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KZ3