Analysis of interatomic Contacts of Structural Units in PDB entry:
6KZ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KZ4 entry

There are 6 chains in PDB entry 6KZ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	LEU 512	LYS 877
F	LEU 512	LYS 877
C	LEU 512	LYS 877
D	LEU 512	LYS 877
A	LEU 512	LYS 877
B	LEU 512	LYS 877

There are 35 helices in PDB entry 6KZ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	561	567	Right-handed 310
Helix 2	AA2	E	596	601	Right-handed alpha
Helix 3	AA3	E	626	632	Right-handed alpha
Helix 4	AA4	E	710	715	Right-handed 310
Helix 5	AA5	E	798	802	Right-handed 310
Helix 6	AA6	E	830	834	Right-handed 310
Helix 7	AA7	F	626	632	Right-handed alpha
Helix 8	AA8	F	710	715	Right-handed 310
Helix 9	AA9	F	798	802	Right-handed 310
Helix 10	AB1	F	830	834	Right-handed 310
Helix 11	AB2	C	563	567	Right-handed 310
Helix 12	AB3	C	596	601	Right-handed alpha
Helix 13	AB4	C	626	632	Right-handed alpha
Helix 14	AB5	C	710	715	Right-handed 310
Helix 15	AB6	C	798	802	Right-handed 310
Helix 16	AB7	C	830	834	Right-handed 310
Helix 17	AB8	C	867	871	Right-handed 310
Helix 18	AB9	D	626	632	Right-handed alpha
Helix 19	AC1	D	710	714	Right-handed 310
Helix 20	AC2	D	798	802	Right-handed 310
Helix 21	AC3	D	830	834	Right-handed 310
Helix 22	AC4	D	867	871	Right-handed 310
Helix 23	AC5	A	561	567	Right-handed 310
Helix 24	AC6	A	596	601	Right-handed alpha
Helix 25	AC7	A	626	632	Right-handed alpha
Helix 26	AC8	A	710	715	Right-handed 310
Helix 27	AC9	A	798	802	Right-handed 310
Helix 28	AD1	A	830	834	Right-handed 310
Helix 29	AD2	A	867	871	Right-handed 310
Helix 30	AD3	B	563	567	Right-handed 310
Helix 31	AD4	B	626	632	Right-handed alpha
Helix 32	AD5	B	643	647	Right-handed 310
Helix 33	AD6	B	710	714	Right-handed 310
Helix 34	AD7	B	798	802	Right-handed 310
Helix 35	AD8	B	830	834	Right-handed 310

There are 31 sheets in PDB entry 6KZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	517	521	first strand
Strand 2	E	553	559	anti-parallel
Strand 3	E	539	548	anti-parallel
Strand 4	E	532	534	anti-parallel
Strand 5	E	602	607	parallel
Strand 6	E	571	575	anti-parallel
Strand 7	E	623	624	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	583	584	first strand
Strand 2	E	587	588	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	667	669	first strand
Strand 2	E	674	681	anti-parallel
Strand 3	E	658	663	anti-parallel
Strand 4	E	652	655	anti-parallel
Strand 5	E	718	722	parallel
Strand 6	E	695	699	anti-parallel
Strand 7	E	731	735	parallel
Strand 8	E	635	641	parallel
Strand 9	E	674	681	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	702	704	first strand
Strand 2	E	707	709	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	809	811	first strand
Strand 2	E	837	839	anti-parallel
Strand 3	E	765	768	parallel
Strand 4	E	771	780	anti-parallel
Strand 5	E	788	794	anti-parallel
Strand 6	E	749	754	anti-parallel
Strand 7	E	857	859	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	553	559	first strand
Strand 2	F	538	548	anti-parallel
Strand 3	F	532	535	anti-parallel
Strand 4	F	602	607	parallel
Strand 5	F	571	575	anti-parallel
Strand 6	F	623	624	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	667	669	first strand
Strand 2	F	674	681	anti-parallel
Strand 3	F	658	663	anti-parallel
Strand 4	F	652	655	anti-parallel
Strand 5	F	719	722	parallel
Strand 6	F	695	698	anti-parallel
Strand 7	F	731	735	parallel
Strand 8	F	635	641	parallel
Strand 9	F	674	681	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	702	704	first strand
Strand 2	F	707	709	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	747	748	first strand
Strand 2	F	788	795	anti-parallel
Strand 3	F	771	780	anti-parallel
Strand 4	F	765	768	anti-parallel
Strand 5	F	837	839	parallel
Strand 6	F	809	811	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	747	748	first strand
Strand 2	F	788	795	anti-parallel
Strand 3	F	751	754	anti-parallel
Strand 4	F	857	859	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	517	521	first strand
Strand 2	C	553	559	anti-parallel
Strand 3	C	539	548	anti-parallel
Strand 4	C	532	534	anti-parallel
Strand 5	C	602	607	parallel
Strand 6	C	571	575	anti-parallel
Strand 7	C	623	624	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	583	584	first strand
Strand 2	C	587	588	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	669	first strand
Strand 2	C	674	681	anti-parallel
Strand 3	C	658	663	anti-parallel
Strand 4	C	652	655	anti-parallel
Strand 5	C	719	722	parallel
Strand 6	C	695	698	anti-parallel
Strand 7	C	731	735	parallel
Strand 8	C	635	641	parallel
Strand 9	C	674	681	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	702	704	first strand
Strand 2	C	707	709	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	809	811	first strand
Strand 2	C	837	839	anti-parallel
Strand 3	C	765	768	parallel
Strand 4	C	771	779	anti-parallel
Strand 5	C	788	794	anti-parallel
Strand 6	C	748	754	anti-parallel
Strand 7	C	857	859	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	521	first strand
Strand 2	D	553	559	anti-parallel
Strand 3	D	538	548	anti-parallel
Strand 4	D	532	535	anti-parallel
Strand 5	D	602	607	parallel
Strand 6	D	571	575	anti-parallel
Strand 7	D	623	624	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	580	581	first strand
Strand 2	D	590	591	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	667	669	first strand
Strand 2	D	674	681	anti-parallel
Strand 3	D	658	663	anti-parallel
Strand 4	D	652	655	anti-parallel
Strand 5	D	718	722	parallel
Strand 6	D	695	699	anti-parallel
Strand 7	D	731	735	parallel
Strand 8	D	635	641	parallel
Strand 9	D	674	681	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	702	704	first strand
Strand 2	D	707	709	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	747	748	first strand
Strand 2	D	788	795	anti-parallel
Strand 3	D	771	780	anti-parallel
Strand 4	D	765	768	anti-parallel
Strand 5	D	837	839	parallel
Strand 6	D	809	811	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	747	748	first strand
Strand 2	D	788	795	anti-parallel
Strand 3	D	751	754	anti-parallel
Strand 4	D	857	859	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	521	first strand
Strand 2	A	553	559	anti-parallel
Strand 3	A	539	548	anti-parallel
Strand 4	A	532	534	anti-parallel
Strand 5	A	602	607	parallel
Strand 6	A	571	575	anti-parallel
Strand 7	A	623	624	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	584	first strand
Strand 2	A	587	588	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	667	669	first strand
Strand 2	A	674	681	anti-parallel
Strand 3	A	658	663	anti-parallel
Strand 4	A	652	655	anti-parallel
Strand 5	A	719	722	parallel
Strand 6	A	695	698	anti-parallel
Strand 7	A	731	735	parallel
Strand 8	A	635	641	parallel
Strand 9	A	674	681	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	704	first strand
Strand 2	A	707	709	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	838	839	first strand
Strand 2	A	765	768	parallel
Strand 3	A	771	779	anti-parallel
Strand 4	A	788	794	anti-parallel
Strand 5	A	748	754	anti-parallel
Strand 6	A	857	859	parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	521	first strand
Strand 2	B	553	559	anti-parallel
Strand 3	B	538	548	anti-parallel
Strand 4	B	532	535	anti-parallel
Strand 5	B	602	607	parallel
Strand 6	B	571	575	anti-parallel
Strand 7	B	623	624	parallel

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There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	667	669	first strand
Strand 2	B	674	681	anti-parallel
Strand 3	B	658	663	anti-parallel
Strand 4	B	652	655	anti-parallel
Strand 5	B	718	722	parallel
Strand 6	B	695	699	anti-parallel
Strand 7	B	732	735	parallel
Strand 8	B	635	641	parallel
Strand 9	B	674	681	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	704	first strand
Strand 2	B	707	709	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	747	748	first strand
Strand 2	B	788	795	anti-parallel
Strand 3	B	771	780	anti-parallel
Strand 4	B	765	768	anti-parallel
Strand 5	B	837	839	parallel
Strand 6	B	809	811	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	747	748	first strand
Strand 2	B	788	795	anti-parallel
Strand 3	B	751	754	anti-parallel
Strand 4	B	857	859	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KZ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KZ4