Analysis of interatomic Contacts of Structural Units in PDB entry:
6KZ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KZ8 entry

There are 2 chains in PDB entry 6KZ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	THR 810
B	ALA 2	THR 810

There are 43 helices in PDB entry 6KZ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	114	116	Right-handed 310
Helix 2	AA2	A	152	154	Right-handed 310
Helix 3	AA3	A	210	222	Right-handed alpha
Helix 4	AA4	A	253	264	Right-handed alpha
Helix 5	AA5	A	292	300	Right-handed alpha
Helix 6	AA6	A	318	326	Right-handed alpha
Helix 7	AA7	A	395	399	Right-handed 310
Helix 8	AA8	A	415	432	Right-handed alpha
Helix 9	AA9	A	439	444	Right-handed 310
Helix 10	AB1	A	481	488	Right-handed alpha
Helix 11	AB2	A	501	512	Right-handed alpha
Helix 12	AB3	A	527	531	Right-handed 310
Helix 13	AB4	A	537	541	Right-handed 310
Helix 14	AB5	A	546	562	Right-handed alpha
Helix 15	AB6	A	581	609	Right-handed alpha
Helix 16	AB7	A	614	617	Right-handed 310
Helix 17	AB8	A	645	654	Right-handed alpha
Helix 18	AB9	A	680	685	Right-handed alpha
Helix 19	AC1	A	710	725	Right-handed alpha
Helix 20	AC2	A	728	733	Right-handed 310
Helix 21	AC3	A	736	756	Right-handed alpha
Helix 22	AC4	A	805	810	Right-handed alpha
Helix 23	AC5	B	114	116	Right-handed 310
Helix 24	AC6	B	152	154	Right-handed 310
Helix 25	AC7	B	210	222	Right-handed alpha
Helix 26	AC8	B	253	264	Right-handed alpha
Helix 27	AC9	B	291	300	Right-handed alpha
Helix 28	AD1	B	318	326	Right-handed alpha
Helix 29	AD2	B	415	432	Right-handed alpha
Helix 30	AD3	B	439	444	Right-handed 310
Helix 31	AD4	B	481	488	Right-handed alpha
Helix 32	AD5	B	501	512	Right-handed alpha
Helix 33	AD6	B	527	531	Right-handed 310
Helix 34	AD7	B	537	541	Right-handed 310
Helix 35	AD8	B	546	562	Right-handed alpha
Helix 36	AD9	B	581	609	Right-handed alpha
Helix 37	AE1	B	614	617	Right-handed 310
Helix 38	AE2	B	645	654	Right-handed alpha
Helix 39	AE3	B	680	685	Right-handed alpha
Helix 40	AE4	B	710	725	Right-handed alpha
Helix 41	AE5	B	728	733	Right-handed 310
Helix 42	AE6	B	736	756	Right-handed alpha
Helix 43	AE7	B	805	810	Right-handed alpha

There are 12 sheets in PDB entry 6KZ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	88	first strand
Strand 2	A	4	16	anti-parallel
Strand 3	A	143	150	anti-parallel
Strand 4	A	123	124	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	63	first strand
Strand 2	A	50	56	anti-parallel
Strand 3	A	90	97	anti-parallel
Strand 4	A	104	112	anti-parallel

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There are 15 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	309	first strand
Strand 2	A	267	273	parallel
Strand 3	A	225	230	parallel
Strand 4	A	335	341	anti-parallel
Strand 5	A	351	358	anti-parallel
Strand 6	A	408	413	anti-parallel
Strand 7	A	177	186	anti-parallel
Strand 8	A	462	471	anti-parallel
Strand 9	A	691	697	anti-parallel
Strand 10	A	671	675	anti-parallel
Strand 11	A	663	667	anti-parallel
Strand 12	A	516	521	anti-parallel
Strand 13	A	566	570	parallel
Strand 14	A	619	627	parallel
Strand 15	A	655	657	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	491	492	first strand
Strand 2	A	497	500	anti-parallel
Strand 3	A	462	471	anti-parallel
Strand 4	A	691	697	anti-parallel
Strand 5	A	671	675	anti-parallel
Strand 6	A	663	667	anti-parallel
Strand 7	A	516	521	anti-parallel
Strand 8	A	566	570	parallel
Strand 9	A	619	627	parallel
Strand 10	A	767	769	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	659	660	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	772	774	first strand
Strand 2	A	780	782	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	88	first strand
Strand 2	B	4	17	anti-parallel
Strand 3	B	141	150	anti-parallel
Strand 4	B	122	127	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	63	first strand
Strand 2	B	50	56	anti-parallel
Strand 3	B	90	97	anti-parallel
Strand 4	B	104	112	anti-parallel

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There are 15 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	309	first strand
Strand 2	B	267	273	parallel
Strand 3	B	225	230	parallel
Strand 4	B	335	341	anti-parallel
Strand 5	B	351	358	anti-parallel
Strand 6	B	408	413	anti-parallel
Strand 7	B	177	186	anti-parallel
Strand 8	B	462	471	anti-parallel
Strand 9	B	691	697	anti-parallel
Strand 10	B	671	675	anti-parallel
Strand 11	B	663	667	anti-parallel
Strand 12	B	516	521	anti-parallel
Strand 13	B	566	570	parallel
Strand 14	B	619	627	parallel
Strand 15	B	655	657	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	492	first strand
Strand 2	B	497	500	anti-parallel
Strand 3	B	462	471	anti-parallel
Strand 4	B	691	697	anti-parallel
Strand 5	B	671	675	anti-parallel
Strand 6	B	663	667	anti-parallel
Strand 7	B	516	521	anti-parallel
Strand 8	B	566	570	parallel
Strand 9	B	619	627	parallel
Strand 10	B	767	769	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	406	first strand
Strand 2	B	659	660	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	772	774	first strand
Strand 2	B	780	782	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KZ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KZ8