Analysis of interatomic Contacts of Structural Units in PDB entry:
6KZA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KZA entry

There are 4 chains in PDB entry 6KZA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 180ASP 470
B
 LYS 180GLU 471
C
 VAL 4ALA 50
D
 GLY 5LYS 52
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 6KZA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
181 198Right-handed alpha
Helix 2
AA2
A
211 219Right-handed alpha
Helix 3
AA3
A
236 251Right-handed alpha
Helix 4
AA4
A
264 278Right-handed alpha
Helix 5
AA5
A
280 286Right-handed alpha
Helix 6
AA6
A
290 308Right-handed alpha
Helix 7
AA7
A
319 334Right-handed alpha
Helix 8
AA8
A
344 348Right-handed 310
Helix 9
AA9
A
350 354Right-handed 310
Helix 10
AB1
A
356 375Right-handed alpha
Helix 11
AB2
A
386 392Right-handed 310
Helix 12
AB3
A
398 403Right-handed 310
Helix 13
AB4
A
407 412Right-handed alpha
Helix 14
AB5
A
420 425Right-handed alpha
Helix 15
AB6
B
181 197Right-handed alpha
Helix 16
AB7
B
211 219Right-handed alpha
Helix 17
AB8
B
232 235Right-handed 310
Helix 18
AB9
B
236 252Right-handed alpha
Helix 19
AC1
B
264 278Right-handed alpha
Helix 20
AC2
B
280 287Right-handed alpha
Helix 21
AC3
B
290 308Right-handed alpha
Helix 22
AC4
B
319 334Right-handed alpha
Helix 23
AC5
B
344 348Right-handed 310
Helix 24
AC6
B
350 354Right-handed 310
Helix 25
AC7
B
356 376Right-handed alpha
Helix 26
AC8
B
386 392Right-handed 310
Helix 27
AC9
B
398 403Right-handed 310
Helix 28
AD1
B
407 412Right-handed alpha
Helix 29
AD2
B
420 425Right-handed alpha
Helix 30
AD3
C
5 14Right-handed alpha
Helix 31
AD4
C
25 50Right-handed alpha
Helix 32
AD5
D
6 15Right-handed alpha
Helix 33
AD6
D
25 50Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6KZA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 313first strand
Strand 2
A
256 259parallel
Strand 3
A
339 342parallel
Strand 4
A
379 383parallel
Strand 5
A
226 230parallel
Strand 6
A
414 419parallel
Strand 7
A
433 441anti-parallel
Strand 8
A
447 454anti-parallel
Strand 9
A
459 462anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 313first strand
Strand 2
B
256 260parallel
Strand 3
B
339 343parallel
Strand 4
B
379 384parallel
Strand 5
B
226 231parallel
Strand 6
B
414 419parallel
Strand 7
B
433 441anti-parallel
Strand 8
B
447 454anti-parallel
Strand 9
B
459 462anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il