Analysis of interatomic Contacts of Structural Units in PDB entry:
6KZB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KZB entry

There are 3 chains in PDB entry 6KZB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ALA 687
B	GLU 3	ALA 687
C	ARG 9	ALA 687

There are 39 helices in PDB entry 6KZB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	21	Right-handed alpha
Helix 2	AA2	A	152	160	Right-handed alpha
Helix 3	AA3	A	188	199	Right-handed alpha
Helix 4	AA4	A	200	206	Right-handed alpha
Helix 5	AA5	A	206	214	Right-handed alpha
Helix 6	AA6	A	216	227	Right-handed alpha
Helix 7	AA7	A	256	267	Right-handed alpha
Helix 8	AA8	A	276	291	Right-handed alpha
Helix 9	AA9	A	376	382	Right-handed alpha
Helix 10	AB1	A	389	399	Right-handed alpha
Helix 11	AB2	A	439	444	Right-handed alpha
Helix 12	AB3	A	449	459	Right-handed alpha
Helix 13	AB4	A	547	552	Right-handed alpha
Helix 14	AB5	B	14	22	Right-handed 310
Helix 15	AB6	B	152	160	Right-handed alpha
Helix 16	AB7	B	188	199	Right-handed alpha
Helix 17	AB8	B	200	206	Right-handed alpha
Helix 18	AB9	B	206	214	Right-handed alpha
Helix 19	AC1	B	216	227	Right-handed alpha
Helix 20	AC2	B	256	267	Right-handed alpha
Helix 21	AC3	B	277	291	Right-handed alpha
Helix 22	AC4	B	376	382	Right-handed alpha
Helix 23	AC5	B	389	399	Right-handed alpha
Helix 24	AC6	B	439	444	Right-handed alpha
Helix 25	AC7	B	449	460	Right-handed alpha
Helix 26	AC8	B	547	553	Right-handed alpha
Helix 27	AC9	C	15	21	Right-handed alpha
Helix 28	AD1	C	152	160	Right-handed alpha
Helix 29	AD2	C	188	199	Right-handed alpha
Helix 30	AD3	C	200	206	Right-handed alpha
Helix 31	AD4	C	206	214	Right-handed alpha
Helix 32	AD5	C	216	227	Right-handed alpha
Helix 33	AD6	C	256	267	Right-handed alpha
Helix 34	AD7	C	276	291	Right-handed alpha
Helix 35	AD8	C	376	382	Right-handed alpha
Helix 36	AD9	C	389	399	Right-handed alpha
Helix 37	AE1	C	439	444	Right-handed alpha
Helix 38	AE2	C	449	459	Right-handed alpha
Helix 39	AE3	C	547	553	Right-handed alpha

There are 28 sheets in PDB entry 6KZB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	12	first strand
Strand 2	A	38	45	anti-parallel
Strand 3	A	99	105	anti-parallel
Strand 4	A	89	96	anti-parallel
Strand 5	A	74	80	parallel
Strand 6	A	56	62	anti-parallel
Strand 7	A	113	122	anti-parallel
Strand 8	A	128	138	anti-parallel
Strand 9	A	31	34	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	170	first strand
Strand 2	A	175	181	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	272	275	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	A	353	357	anti-parallel
Strand 3	A	332	342	anti-parallel
Strand 4	A	295	303	anti-parallel
Strand 5	A	424	429	anti-parallel
Strand 6	A	436	438	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	317	first strand
Strand 2	A	400	406	parallel
Strand 3	A	412	414	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	363	first strand
Strand 2	A	368	369	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	417	first strand
Strand 2	A	574	583	parallel
Strand 3	A	560	569	anti-parallel
Strand 4	A	503	514	anti-parallel
Strand 5	A	520	534	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	478	first strand
Strand 2	A	489	497	anti-parallel
Strand 3	A	538	546	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	594	first strand
Strand 2	A	603	610	anti-parallel
Strand 3	A	647	654	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	634	637	first strand
Strand 2	A	621	625	anti-parallel
Strand 3	A	660	669	anti-parallel
Strand 4	A	676	684	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	12	first strand
Strand 2	B	38	46	anti-parallel
Strand 3	B	99	105	anti-parallel
Strand 4	B	89	96	anti-parallel
Strand 5	B	74	80	parallel
Strand 6	B	56	62	anti-parallel
Strand 7	B	113	122	anti-parallel
Strand 8	B	129	138	anti-parallel
Strand 9	B	31	34	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	170	first strand
Strand 2	B	175	181	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	238	first strand
Strand 2	B	272	273	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	353	357	anti-parallel
Strand 3	B	332	342	anti-parallel
Strand 4	B	295	303	anti-parallel
Strand 5	B	424	429	anti-parallel
Strand 6	B	436	438	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	317	first strand
Strand 2	B	400	406	parallel
Strand 3	B	412	414	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	478	first strand
Strand 2	B	489	497	anti-parallel
Strand 3	B	538	546	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	534	first strand
Strand 2	B	503	514	anti-parallel
Strand 3	B	560	568	anti-parallel
Strand 4	B	575	583	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	594	first strand
Strand 2	B	603	610	anti-parallel
Strand 3	B	647	654	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	637	first strand
Strand 2	B	621	625	anti-parallel
Strand 3	B	660	669	anti-parallel
Strand 4	B	676	684	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	39	44	anti-parallel
Strand 3	C	99	105	anti-parallel
Strand 4	C	89	96	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	133	138	parallel
Strand 3	C	113	118	anti-parallel
Strand 4	C	58	62	anti-parallel
Strand 5	C	74	78	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	170	first strand
Strand 2	C	175	181	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	272	275	parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	375	first strand
Strand 2	C	353	357	anti-parallel
Strand 3	C	332	342	anti-parallel
Strand 4	C	295	303	anti-parallel
Strand 5	C	424	429	anti-parallel
Strand 6	C	436	438	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	317	first strand
Strand 2	C	400	405	parallel
Strand 3	C	413	417	anti-parallel
Strand 4	C	574	583	parallel
Strand 5	C	560	569	anti-parallel
Strand 6	C	503	514	anti-parallel
Strand 7	C	520	534	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	474	478	first strand
Strand 2	C	489	497	anti-parallel
Strand 3	C	538	546	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	589	594	first strand
Strand 2	C	603	610	anti-parallel
Strand 3	C	647	654	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	637	first strand
Strand 2	C	621	625	anti-parallel
Strand 3	C	660	669	anti-parallel
Strand 4	C	676	684	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KZB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KZB