Analysis of interatomic Contacts of Structural Units in PDB entry:
6KZM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KZM entry

There are 4 chains in PDB entry 6KZM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 3	VAL 809
B	HIS 3	VAL 809
C	HIS 3	VAL 809
D	HIS 3	VAL 809

There are109 helices in PDB entry 6KZM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	39	Right-handed alpha
Helix 2	AA2	A	59	74	Right-handed alpha
Helix 3	AA3	A	86	95	Right-handed alpha
Helix 4	AA4	A	124	140	Right-handed alpha
Helix 5	AA5	A	150	157	Right-handed alpha
Helix 6	AA6	A	157	162	Right-handed alpha
Helix 7	AA7	A	183	192	Right-handed alpha
Helix 8	AA8	A	203	217	Right-handed alpha
Helix 9	AA9	A	238	245	Right-handed alpha
Helix 10	AB1	A	258	269	Right-handed alpha
Helix 11	AB2	A	289	308	Right-handed alpha
Helix 12	AB3	A	327	337	Right-handed alpha
Helix 13	AB4	A	426	429	Right-handed 310
Helix 14	AB5	A	433	443	Right-handed alpha
Helix 15	AB6	A	470	478	Right-handed alpha
Helix 16	AB7	A	491	496	Right-handed alpha
Helix 17	AB8	A	531	554	Right-handed alpha
Helix 18	AB9	A	604	634	Right-handed alpha
Helix 19	AC1	A	641	648	Right-handed alpha
Helix 20	AC2	A	659	668	Right-handed alpha
Helix 21	AC3	A	670	683	Right-handed alpha
Helix 22	AC4	A	684	687	Right-handed 310
Helix 23	AC5	A	691	699	Right-handed alpha
Helix 24	AC6	A	709	719	Right-handed alpha
Helix 25	AC7	A	744	758	Right-handed alpha
Helix 26	AC8	A	759	769	Right-handed alpha
Helix 27	AC9	A	791	802	Right-handed alpha
Helix 28	AD1	B	23	39	Right-handed alpha
Helix 29	AD2	B	60	74	Right-handed alpha
Helix 30	AD3	B	83	97	Right-handed alpha
Helix 31	AD4	B	125	140	Right-handed alpha
Helix 32	AD5	B	151	157	Right-handed alpha
Helix 33	AD6	B	158	161	Right-handed 310
Helix 34	AD7	B	183	194	Right-handed alpha
Helix 35	AD8	B	203	217	Right-handed alpha
Helix 36	AD9	B	241	245	Right-handed 310
Helix 37	AE1	B	258	269	Right-handed alpha
Helix 38	AE2	B	289	309	Right-handed alpha
Helix 39	AE3	B	326	337	Right-handed alpha
Helix 40	AE4	B	426	429	Right-handed 310
Helix 41	AE5	B	433	447	Right-handed alpha
Helix 42	AE6	B	471	478	Right-handed alpha
Helix 43	AE7	B	493	496	Right-handed 310
Helix 44	AE8	B	531	552	Right-handed alpha
Helix 45	AE9	B	604	635	Right-handed alpha
Helix 46	AF1	B	642	648	Right-handed alpha
Helix 47	AF2	B	659	666	Right-handed alpha
Helix 48	AF3	B	670	683	Right-handed alpha
Helix 49	AF4	B	690	701	Right-handed alpha
Helix 50	AF5	B	709	717	Right-handed alpha
Helix 51	AF6	B	743	758	Right-handed alpha
Helix 52	AF7	B	759	769	Right-handed alpha
Helix 53	AF8	B	797	802	Right-handed 310
Helix 54	AF9	C	23	39	Right-handed alpha
Helix 55	AG1	C	59	74	Right-handed alpha
Helix 56	AG2	C	83	95	Right-handed alpha
Helix 57	AG3	C	124	134	Right-handed alpha
Helix 58	AG4	C	135	140	Right-handed alpha
Helix 59	AG5	C	151	157	Right-handed alpha
Helix 60	AG6	C	157	162	Right-handed alpha
Helix 61	AG7	C	162	167	Right-handed alpha
Helix 62	AG8	C	182	194	Right-handed alpha
Helix 63	AG9	C	203	217	Right-handed alpha
Helix 64	AH1	C	258	270	Right-handed alpha
Helix 65	AH2	C	290	309	Right-handed alpha
Helix 66	AH3	C	327	338	Right-handed alpha
Helix 67	AH4	C	433	446	Right-handed alpha
Helix 68	AH5	C	470	478	Right-handed alpha
Helix 69	AH6	C	491	498	Right-handed alpha
Helix 70	AH7	C	531	544	Right-handed alpha
Helix 71	AH8	C	546	553	Right-handed alpha
Helix 72	AH9	C	604	634	Right-handed alpha
Helix 73	AI1	C	641	648	Right-handed alpha
Helix 74	AI2	C	659	668	Right-handed alpha
Helix 75	AI3	C	670	683	Right-handed alpha
Helix 76	AI4	C	690	701	Right-handed alpha
Helix 77	AI5	C	709	717	Right-handed alpha
Helix 78	AI6	C	744	758	Right-handed alpha
Helix 79	AI7	C	759	769	Right-handed alpha
Helix 80	AI8	C	796	800	Right-handed 310
Helix 81	AI9	C	802	806	Right-handed 310
Helix 82	AJ1	D	15	19	Right-handed 310
Helix 83	AJ2	D	23	37	Right-handed alpha
Helix 84	AJ3	D	38	43	Right-handed 310
Helix 85	AJ4	D	59	74	Right-handed alpha
Helix 86	AJ5	D	86	97	Right-handed alpha
Helix 87	AJ6	D	124	140	Right-handed alpha
Helix 88	AJ7	D	151	158	Right-handed alpha
Helix 89	AJ8	D	159	163	Right-handed 310
Helix 90	AJ9	D	183	194	Right-handed alpha
Helix 91	AK1	D	203	217	Right-handed alpha
Helix 92	AK2	D	258	272	Right-handed alpha
Helix 93	AK3	D	289	308	Right-handed alpha
Helix 94	AK4	D	327	338	Right-handed alpha
Helix 95	AK5	D	426	429	Right-handed 310
Helix 96	AK6	D	433	447	Right-handed alpha
Helix 97	AK7	D	470	478	Right-handed alpha
Helix 98	AK8	D	491	496	Right-handed alpha
Helix 99	AK9	D	531	554	Right-handed alpha
Helix 100	AL1	D	604	637	Right-handed alpha
Helix 101	AL2	D	641	648	Right-handed alpha
Helix 102	AL3	D	659	667	Right-handed alpha
Helix 103	AL4	D	670	681	Right-handed alpha
Helix 104	AL5	D	690	701	Right-handed alpha
Helix 105	AL6	D	709	717	Right-handed alpha
Helix 106	AL7	D	742	759	Right-handed alpha
Helix 107	AL8	D	759	769	Right-handed alpha
Helix 108	AL9	D	788	792	Right-handed 310
Helix 109	AM1	D	793	800	Right-handed alpha

There are 36 sheets in PDB entry 6KZM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	12	first strand
Strand 2	A	47	55	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	143	148	parallel
Strand 3	A	200	201	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	361	367	anti-parallel
Strand 3	A	370	378	anti-parallel
Strand 4	A	382	384	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	345	346	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	454	first strand
Strand 2	A	406	409	parallel
Strand 3	A	483	485	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	418	first strand
Strand 2	A	431	432	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	501	first strand
Strand 2	A	736	737	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	655	first strand
Strand 2	A	703	708	parallel
Strand 3	A	506	514	anti-parallel
Strand 4	A	722	725	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	652	655	first strand
Strand 2	A	703	708	parallel
Strand 3	A	506	514	anti-parallel
Strand 4	A	731	733	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	47	50	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	101	103	parallel
Strand 3	B	118	120	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	146	148	parallel
Strand 3	B	197	200	parallel
Strand 4	B	225	228	parallel
Strand 5	B	248	250	parallel
Strand 6	B	362	365	anti-parallel
Strand 7	B	372	376	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	342	first strand
Strand 2	B	345	347	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	409	first strand
Strand 2	B	449	454	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	418	first strand
Strand 2	B	431	432	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	489	first strand
Strand 2	B	732	739	anti-parallel
Strand 3	B	498	499	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	489	first strand
Strand 2	B	732	739	anti-parallel
Strand 3	B	506	507	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	654	first strand
Strand 2	B	703	708	parallel
Strand 3	B	509	514	anti-parallel
Strand 4	B	722	725	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	4	12	parallel
Strand 3	C	53	55	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	50	first strand
Strand 2	C	4	12	parallel
Strand 3	C	78	79	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	143	148	parallel
Strand 3	C	198	201	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	227	first strand
Strand 2	C	247	250	parallel
Strand 3	C	363	367	anti-parallel
Strand 4	C	370	375	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	342	first strand
Strand 2	C	345	347	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	406	409	parallel
Strand 3	C	483	484	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	418	first strand
Strand 2	C	431	432	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	652	654	first strand
Strand 2	C	703	708	parallel
Strand 3	C	509	514	anti-parallel
Strand 4	C	722	725	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	47	51	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	54	55	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	148	first strand
Strand 2	D	173	175	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	199	first strand
Strand 2	D	225	227	parallel
Strand 3	D	247	249	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	252	first strand
Strand 2	D	361	367	anti-parallel
Strand 3	D	370	378	anti-parallel
Strand 4	D	382	384	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	342	first strand
Strand 2	D	345	346	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	349	first strand
Strand 2	D	356	358	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	404	409	first strand
Strand 2	D	449	454	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	418	first strand
Strand 2	D	431	432	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	653	655	first strand
Strand 2	D	704	708	parallel
Strand 3	D	509	514	anti-parallel
Strand 4	D	722	725	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KZM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KZM