Analysis of interatomic Contacts of Structural Units in PDB entry:
6L06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L06 entry

There are 8 chains in PDB entry 6L06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP -1	GLY 253
E	THR 255	GLU 288
B	ASP -1	GLY 253
F	THR 255	GLU 288
C	ASP -1	GLY 253
G	THR 255	GLU 288
D	ASP -1	GLY 253
H	THR 255	GLU 288

There are 42 helices in PDB entry 6L06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-1	13	Right-handed alpha
Helix 2	AA2	A	14	27	Right-handed alpha
Helix 3	AA3	A	31	46	Right-handed alpha
Helix 4	AA4	A	48	52	Right-handed 310
Helix 5	AA5	A	56	60	Right-handed 310
Helix 6	AA6	A	62	68	Right-handed alpha
Helix 7	AA7	A	72	76	Right-handed 310
Helix 8	AA8	A	114	118	Right-handed alpha
Helix 9	AA9	A	121	127	Right-handed alpha
Helix 10	AB1	A	170	174	Right-handed 310
Helix 11	AB2	A	177	182	Right-handed alpha
Helix 12	AB3	B	0	13	Right-handed alpha
Helix 13	AB4	B	14	27	Right-handed alpha
Helix 14	AB5	B	30	45	Right-handed alpha
Helix 15	AB6	B	48	52	Right-handed 310
Helix 16	AB7	B	56	60	Right-handed 310
Helix 17	AB8	B	62	68	Right-handed alpha
Helix 18	AB9	B	72	76	Right-handed 310
Helix 19	AC1	B	114	118	Right-handed alpha
Helix 20	AC2	B	121	127	Right-handed alpha
Helix 21	AC3	B	177	182	Right-handed alpha
Helix 22	AC4	C	1	13	Right-handed alpha
Helix 23	AC5	C	14	27	Right-handed alpha
Helix 24	AC6	C	31	46	Right-handed alpha
Helix 25	AC7	C	56	60	Right-handed 310
Helix 26	AC8	C	62	68	Right-handed alpha
Helix 27	AC9	C	72	76	Right-handed 310
Helix 28	AD1	C	114	118	Right-handed alpha
Helix 29	AD2	C	121	127	Right-handed alpha
Helix 30	AD3	C	168	173	Right-handed alpha
Helix 31	AD4	C	177	182	Right-handed alpha
Helix 32	AD5	D	0	13	Right-handed alpha
Helix 33	AD6	D	14	26	Right-handed alpha
Helix 34	AD7	D	31	46	Right-handed alpha
Helix 35	AD8	D	48	52	Right-handed 310
Helix 36	AD9	D	56	60	Right-handed 310
Helix 37	AE1	D	62	68	Right-handed alpha
Helix 38	AE2	D	72	76	Right-handed 310
Helix 39	AE3	D	114	118	Right-handed alpha
Helix 40	AE4	D	121	129	Right-handed alpha
Helix 41	AE5	D	168	175	Right-handed alpha
Helix 42	AE6	D	177	182	Right-handed alpha

There are 20 sheets in PDB entry 6L06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	86	first strand
Strand 2	E	282	286	anti-parallel
Strand 3	E	265	267	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	152	160	anti-parallel
Strand 3	A	240	241	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	152	160	anti-parallel
Strand 3	A	184	191	anti-parallel
Strand 4	A	194	201	anti-parallel
Strand 5	E	256	260	anti-parallel
Strand 6	A	132	137	anti-parallel
Strand 7	A	91	98	anti-parallel
Strand 8	E	276	277	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	107	first strand
Strand 2	A	110	113	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	246	251	anti-parallel
Strand 3	A	208	211	anti-parallel
Strand 4	A	215	218	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	86	first strand
Strand 2	F	282	286	anti-parallel
Strand 3	F	265	267	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	229	first strand
Strand 2	B	152	160	anti-parallel
Strand 3	B	239	241	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	229	first strand
Strand 2	B	152	160	anti-parallel
Strand 3	B	184	191	anti-parallel
Strand 4	B	194	201	anti-parallel
Strand 5	F	256	260	anti-parallel
Strand 6	B	132	137	anti-parallel
Strand 7	B	91	98	anti-parallel
Strand 8	F	276	277	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	107	first strand
Strand 2	B	110	113	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	246	251	anti-parallel
Strand 3	B	208	211	anti-parallel
Strand 4	B	215	218	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	86	first strand
Strand 2	G	282	286	anti-parallel
Strand 3	G	265	267	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	229	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	240	241	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	229	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	184	191	anti-parallel
Strand 4	C	194	201	anti-parallel
Strand 5	G	256	260	anti-parallel
Strand 6	C	132	137	anti-parallel
Strand 7	C	91	98	anti-parallel
Strand 8	G	276	277	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	107	first strand
Strand 2	C	110	113	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	246	251	anti-parallel
Strand 3	C	208	211	anti-parallel
Strand 4	C	215	218	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	H	282	286	anti-parallel
Strand 3	H	265	267	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	229	first strand
Strand 2	D	152	160	anti-parallel
Strand 3	D	240	241	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	229	first strand
Strand 2	D	152	160	anti-parallel
Strand 3	D	184	191	anti-parallel
Strand 4	D	194	201	anti-parallel
Strand 5	H	256	260	anti-parallel
Strand 6	D	132	137	anti-parallel
Strand 7	D	91	98	anti-parallel
Strand 8	H	276	277	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	107	first strand
Strand 2	D	110	113	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	246	251	anti-parallel
Strand 3	D	208	211	anti-parallel
Strand 4	D	215	218	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L06

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L06