Analysis of interatomic Contacts of Structural Units in PDB entry:
6L07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L07 entry

There are 16 chains in PDB entry 6L07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP -1	GLY 253
I	THR 255	GLU 288
B	ASP -1	GLY 253
J	THR 255	GLU 288
C	ASP -1	GLY 253
K	THR 255	GLU 288
D	ASP -1	GLY 253
N	THR 255	GLU 288
E	ASP -1	GLY 253
L	THR 255	GLU 288
F	ASP -1	GLY 253
O	THR 255	GLU 288
G	ASP -1	GLY 253
M	THR 255	THR 287
H	ASP -1	GLY 253
P	THR 255	GLU 288

There are 83 helices in PDB entry 6L07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-1	13	Right-handed alpha
Helix 2	AA2	A	14	27	Right-handed alpha
Helix 3	AA3	A	31	46	Right-handed alpha
Helix 4	AA4	A	48	52	Right-handed 310
Helix 5	AA5	A	56	60	Right-handed 310
Helix 6	AA6	A	62	68	Right-handed alpha
Helix 7	AA7	A	72	76	Right-handed 310
Helix 8	AA8	A	114	118	Right-handed alpha
Helix 9	AA9	A	121	128	Right-handed alpha
Helix 10	AB1	A	168	173	Right-handed alpha
Helix 11	AB2	A	177	182	Right-handed alpha
Helix 12	AB3	B	2	13	Right-handed alpha
Helix 13	AB4	B	14	28	Right-handed alpha
Helix 14	AB5	B	31	46	Right-handed alpha
Helix 15	AB6	B	48	52	Right-handed 310
Helix 16	AB7	B	56	60	Right-handed 310
Helix 17	AB8	B	62	68	Right-handed alpha
Helix 18	AB9	B	114	118	Right-handed alpha
Helix 19	AC1	B	121	128	Right-handed alpha
Helix 20	AC2	B	170	174	Right-handed 310
Helix 21	AC3	B	177	182	Right-handed alpha
Helix 22	AC4	J	262	265	Right-handed 310
Helix 23	AC5	C	0	13	Right-handed alpha
Helix 24	AC6	C	14	28	Right-handed alpha
Helix 25	AC7	C	31	46	Right-handed alpha
Helix 26	AC8	C	48	52	Right-handed 310
Helix 27	AC9	C	56	60	Right-handed 310
Helix 28	AD1	C	62	68	Right-handed alpha
Helix 29	AD2	C	72	76	Right-handed 310
Helix 30	AD3	C	100	103	Right-handed 310
Helix 31	AD4	C	113	118	Right-handed alpha
Helix 32	AD5	C	121	126	Right-handed alpha
Helix 33	AD6	C	168	173	Right-handed alpha
Helix 34	AD7	C	177	182	Right-handed alpha
Helix 35	AD8	D	0	13	Right-handed alpha
Helix 36	AD9	D	14	27	Right-handed alpha
Helix 37	AE1	D	31	46	Right-handed alpha
Helix 38	AE2	D	48	52	Right-handed 310
Helix 39	AE3	D	56	60	Right-handed 310
Helix 40	AE4	D	62	68	Right-handed alpha
Helix 41	AE5	D	114	118	Right-handed alpha
Helix 42	AE6	D	121	127	Right-handed alpha
Helix 43	AE7	D	168	173	Right-handed alpha
Helix 44	AE8	D	177	182	Right-handed alpha
Helix 45	AE9	E	0	13	Right-handed alpha
Helix 46	AF1	E	14	26	Right-handed alpha
Helix 47	AF2	E	30	46	Right-handed alpha
Helix 48	AF3	E	48	52	Right-handed 310
Helix 49	AF4	E	56	60	Right-handed 310
Helix 50	AF5	E	62	68	Right-handed alpha
Helix 51	AF6	E	114	118	Right-handed alpha
Helix 52	AF7	E	121	127	Right-handed alpha
Helix 53	AF8	E	168	173	Right-handed alpha
Helix 54	AF9	E	177	182	Right-handed alpha
Helix 55	AG1	F	2	13	Right-handed alpha
Helix 56	AG2	F	14	26	Right-handed alpha
Helix 57	AG3	F	30	46	Right-handed alpha
Helix 58	AG4	F	56	60	Right-handed 310
Helix 59	AG5	F	62	68	Right-handed alpha
Helix 60	AG6	F	72	76	Right-handed 310
Helix 61	AG7	F	114	118	Right-handed alpha
Helix 62	AG8	F	121	126	Right-handed alpha
Helix 63	AG9	F	168	173	Right-handed alpha
Helix 64	AH1	F	177	182	Right-handed alpha
Helix 65	AH2	G	2	13	Right-handed alpha
Helix 66	AH3	G	14	26	Right-handed alpha
Helix 67	AH4	G	31	45	Right-handed alpha
Helix 68	AH5	G	48	52	Right-handed 310
Helix 69	AH6	G	62	68	Right-handed alpha
Helix 70	AH7	G	114	118	Right-handed alpha
Helix 71	AH8	G	121	129	Right-handed alpha
Helix 72	AH9	G	168	173	Right-handed alpha
Helix 73	AI1	G	177	181	Right-handed 310
Helix 74	AI2	M	262	265	Right-handed 310
Helix 75	AI3	H	0	13	Right-handed alpha
Helix 76	AI4	H	14	28	Right-handed alpha
Helix 77	AI5	H	30	46	Right-handed alpha
Helix 78	AI6	H	56	60	Right-handed 310
Helix 79	AI7	H	62	68	Right-handed alpha
Helix 80	AI8	H	114	118	Right-handed alpha
Helix 81	AI9	H	121	126	Right-handed alpha
Helix 82	AJ1	H	170	174	Right-handed 310
Helix 83	AJ2	H	177	182	Right-handed alpha

There are 40 sheets in PDB entry 6L07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	86	first strand
Strand 2	I	282	286	anti-parallel
Strand 3	I	265	267	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	152	160	anti-parallel
Strand 3	A	240	241	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	152	160	anti-parallel
Strand 3	A	184	191	anti-parallel
Strand 4	A	194	201	anti-parallel
Strand 5	I	256	260	anti-parallel
Strand 6	A	132	137	anti-parallel
Strand 7	A	91	98	anti-parallel
Strand 8	I	276	277	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	107	first strand
Strand 2	A	110	113	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	246	251	anti-parallel
Strand 3	A	208	211	anti-parallel
Strand 4	A	215	218	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	86	first strand
Strand 2	J	282	285	anti-parallel
Strand 3	J	266	267	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	229	first strand
Strand 2	B	152	160	anti-parallel
Strand 3	B	240	241	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	229	first strand
Strand 2	B	152	160	anti-parallel
Strand 3	B	184	191	anti-parallel
Strand 4	B	194	201	anti-parallel
Strand 5	J	256	260	anti-parallel
Strand 6	B	132	137	anti-parallel
Strand 7	B	91	98	anti-parallel
Strand 8	J	276	277	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	107	first strand
Strand 2	B	110	113	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	246	251	anti-parallel
Strand 3	B	208	211	anti-parallel
Strand 4	B	215	218	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	86	first strand
Strand 2	K	282	286	anti-parallel
Strand 3	K	265	267	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	229	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	240	241	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	229	first strand
Strand 2	C	152	160	anti-parallel
Strand 3	C	184	191	anti-parallel
Strand 4	C	194	201	anti-parallel
Strand 5	K	256	260	anti-parallel
Strand 6	C	132	137	anti-parallel
Strand 7	C	91	98	anti-parallel
Strand 8	K	276	277	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	107	first strand
Strand 2	C	110	112	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	246	251	anti-parallel
Strand 3	C	208	211	anti-parallel
Strand 4	C	215	218	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	N	282	286	anti-parallel
Strand 3	N	265	267	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	228	first strand
Strand 2	D	152	160	anti-parallel
Strand 3	D	240	241	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	228	first strand
Strand 2	D	152	160	anti-parallel
Strand 3	D	184	191	anti-parallel
Strand 4	D	194	201	anti-parallel
Strand 5	N	256	260	anti-parallel
Strand 6	D	132	137	anti-parallel
Strand 7	D	91	98	anti-parallel
Strand 8	N	276	277	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	107	first strand
Strand 2	D	110	113	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	246	251	anti-parallel
Strand 3	D	208	211	anti-parallel
Strand 4	D	215	218	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	86	first strand
Strand 2	L	282	285	anti-parallel
Strand 3	L	266	267	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	229	first strand
Strand 2	E	152	160	anti-parallel
Strand 3	E	240	241	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	226	229	first strand
Strand 2	E	152	160	anti-parallel
Strand 3	E	184	191	anti-parallel
Strand 4	E	194	201	anti-parallel
Strand 5	L	256	260	anti-parallel
Strand 6	E	132	137	anti-parallel
Strand 7	E	91	98	anti-parallel
Strand 8	L	276	277	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	103	107	first strand
Strand 2	E	110	113	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	145	147	first strand
Strand 2	E	246	251	anti-parallel
Strand 3	E	208	211	anti-parallel
Strand 4	E	215	218	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	86	first strand
Strand 2	O	282	286	anti-parallel
Strand 3	O	265	267	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	229	first strand
Strand 2	F	152	160	anti-parallel
Strand 3	F	240	241	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	229	first strand
Strand 2	F	152	160	anti-parallel
Strand 3	F	184	191	anti-parallel
Strand 4	F	194	201	anti-parallel
Strand 5	O	256	260	anti-parallel
Strand 6	F	132	137	anti-parallel
Strand 7	F	91	98	anti-parallel
Strand 8	O	276	277	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	103	107	first strand
Strand 2	F	110	113	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	147	first strand
Strand 2	F	246	252	anti-parallel
Strand 3	F	206	211	anti-parallel
Strand 4	F	215	218	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	84	86	first strand
Strand 2	M	282	285	anti-parallel
Strand 3	M	266	267	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	229	first strand
Strand 2	G	152	160	anti-parallel
Strand 3	G	240	241	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	226	229	first strand
Strand 2	G	152	160	anti-parallel
Strand 3	G	184	191	anti-parallel
Strand 4	G	194	201	anti-parallel
Strand 5	M	256	260	anti-parallel
Strand 6	G	132	137	anti-parallel
Strand 7	G	91	93	anti-parallel
Strand 8	M	276	277	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	103	107	first strand
Strand 2	G	110	113	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	145	147	first strand
Strand 2	G	246	251	anti-parallel
Strand 3	G	208	211	anti-parallel
Strand 4	G	215	218	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	86	first strand
Strand 2	P	282	286	anti-parallel
Strand 3	P	265	267	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	226	229	first strand
Strand 2	H	152	160	anti-parallel
Strand 3	H	240	241	anti-parallel

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There are 8 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	226	229	first strand
Strand 2	H	152	160	anti-parallel
Strand 3	H	184	191	anti-parallel
Strand 4	H	194	201	anti-parallel
Strand 5	P	256	260	anti-parallel
Strand 6	H	132	137	anti-parallel
Strand 7	H	91	98	anti-parallel
Strand 8	P	276	277	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	103	107	first strand
Strand 2	H	110	113	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	145	147	first strand
Strand 2	H	246	252	anti-parallel
Strand 3	H	206	211	anti-parallel
Strand 4	H	215	218	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L07

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L07