Analysis of interatomic Contacts of Structural Units in PDB entry:
6L08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L08 entry

There are 2 chains in PDB entry 6L08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4ALA 301
B
 SER 0GLU 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6L08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
31 36Right-handed alpha
Helix 4
AA4
A
37 39Right-handed 310
Helix 5
AA5
A
71 75Right-handed 310
Helix 6
AA6
A
77 89Right-handed alpha
Helix 7
AA7
A
104 111Right-handed alpha
Helix 8
AA8
A
112 114Right-handed 310
Helix 9
AA9
A
116 119Right-handed 310
Helix 10
AB1
A
145 149Right-handed alpha
Helix 11
AB2
A
154 158Right-handed 310
Helix 12
AB3
A
193 203Right-handed alpha
Helix 13
AB4
A
242 251Right-handed alpha
Helix 14
AB5
A
276 288Right-handed alpha
Helix 15
AB6
B
9 21Right-handed alpha
Helix 16
AB7
B
27 30Right-handed 310
Helix 17
AB8
B
31 36Right-handed alpha
Helix 18
AB9
B
37 39Right-handed 310
Helix 19
AC1
B
71 75Right-handed 310
Helix 20
AC2
B
77 89Right-handed alpha
Helix 21
AC3
B
104 111Right-handed alpha
Helix 22
AC4
B
112 114Right-handed 310
Helix 23
AC5
B
116 119Right-handed 310
Helix 24
AC6
B
130 134Right-handed 310
Helix 25
AC7
B
145 149Right-handed alpha
Helix 26
AC8
B
154 158Right-handed 310
Helix 27
AC9
B
195 203Right-handed alpha
Helix 28
AD1
B
242 251Right-handed alpha
Helix 29
AD2
B
276 288Right-handed alpha
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There are 3 sheets in PDB entry 6L08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
59 63anti-parallel
Strand 3
A
49 54anti-parallel
Strand 4
A
94 99anti-parallel
Strand 5
A
121 124parallel
Strand 6
A
143 144anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
59 63anti-parallel
Strand 3
B
49 54anti-parallel
Strand 4
B
94 99anti-parallel
Strand 5
B
121 124parallel
Strand 6
B
143 144anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 215first strand
Strand 2
B
227 228anti-parallel
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