Analysis of interatomic Contacts of Structural Units in PDB entry:
6L0F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L0F entry

There are 8 chains in PDB entry 6L0F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	VAL 97
A	CYS 99	LEU 365
B	VAL 2	VAL 97
B	CYS 99	LEU 365
C	VAL 2	VAL 97
C	CYS 99	LEU 365
D	VAL 2	VAL 97
D	CYS 99	LEU 365

There are 67 helices in PDB entry 6L0F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	33	Right-handed alpha
Helix 2	AA2	A	50	65	Right-handed alpha
Helix 3	AA3	A	81	91	Right-handed alpha
Helix 4	AA4	A	116	119	Right-handed 310
Helix 5	AA5	A	120	130	Right-handed alpha
Helix 6	AA6	A	157	159	Right-handed 310
Helix 7	AA7	A	160	171	Right-handed alpha
Helix 8	AA8	A	183	194	Right-handed alpha
Helix 9	AA9	A	199	203	Right-handed 310
Helix 10	AB1	A	211	215	Right-handed 310
Helix 11	AB2	A	217	223	Right-handed alpha
Helix 12	AB3	A	224	228	Right-handed 310
Helix 13	AB4	A	235	247	Right-handed alpha
Helix 14	AB5	A	263	267	Right-handed 310
Helix 15	AB6	A	282	294	Right-handed alpha
Helix 16	AB7	A	296	298	Right-handed 310
Helix 17	AB8	A	299	305	Right-handed alpha
Helix 18	AB9	A	305	313	Right-handed alpha
Helix 19	AC1	B	20	33	Right-handed alpha
Helix 20	AC2	B	50	65	Right-handed alpha
Helix 21	AC3	B	81	91	Right-handed alpha
Helix 22	AC4	B	117	119	Right-handed 310
Helix 23	AC5	B	120	130	Right-handed alpha
Helix 24	AC6	B	155	171	Right-handed alpha
Helix 25	AC7	B	183	194	Right-handed alpha
Helix 26	AC8	B	199	203	Right-handed 310
Helix 27	AC9	B	211	215	Right-handed 310
Helix 28	AD1	B	217	222	Right-handed alpha
Helix 29	AD2	B	224	228	Right-handed 310
Helix 30	AD3	B	235	248	Right-handed alpha
Helix 31	AD4	B	263	268	Right-handed alpha
Helix 32	AD5	B	282	295	Right-handed alpha
Helix 33	AD6	B	296	298	Right-handed 310
Helix 34	AD7	B	299	305	Right-handed alpha
Helix 35	AD8	B	305	313	Right-handed alpha
Helix 36	AD9	C	20	34	Right-handed alpha
Helix 37	AE1	C	50	65	Right-handed alpha
Helix 38	AE2	C	81	91	Right-handed alpha
Helix 39	AE3	C	113	119	Right-handed 310
Helix 40	AE4	C	120	130	Right-handed alpha
Helix 41	AE5	C	155	171	Right-handed alpha
Helix 42	AE6	C	183	194	Right-handed alpha
Helix 43	AE7	C	211	215	Right-handed 310
Helix 44	AE8	C	217	222	Right-handed alpha
Helix 45	AE9	C	224	228	Right-handed 310
Helix 46	AF1	C	235	247	Right-handed alpha
Helix 47	AF2	C	263	268	Right-handed alpha
Helix 48	AF3	C	282	294	Right-handed alpha
Helix 49	AF4	C	296	298	Right-handed 310
Helix 50	AF5	C	299	305	Right-handed alpha
Helix 51	AF6	C	305	313	Right-handed alpha
Helix 52	AF7	D	20	33	Right-handed alpha
Helix 53	AF8	D	50	65	Right-handed alpha
Helix 54	AF9	D	81	91	Right-handed alpha
Helix 55	AG1	D	117	119	Right-handed 310
Helix 56	AG2	D	120	130	Right-handed alpha
Helix 57	AG3	D	155	171	Right-handed alpha
Helix 58	AG4	D	183	194	Right-handed alpha
Helix 59	AG5	D	199	203	Right-handed 310
Helix 60	AG6	D	217	222	Right-handed alpha
Helix 61	AG7	D	224	228	Right-handed 310
Helix 62	AG8	D	235	247	Right-handed alpha
Helix 63	AG9	D	263	268	Right-handed alpha
Helix 64	AH1	D	282	294	Right-handed alpha
Helix 65	AH2	D	296	298	Right-handed 310
Helix 66	AH3	D	299	305	Right-handed alpha
Helix 67	AH4	D	305	313	Right-handed alpha

There are 20 sheets in PDB entry 6L0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	324	328	anti-parallel
Strand 3	A	358	362	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	15	first strand
Strand 2	A	37	40	parallel
Strand 3	A	69	71	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	96	99	parallel
Strand 3	A	133	136	parallel
Strand 4	A	175	178	parallel
Strand 5	A	205	209	parallel
Strand 6	A	253	255	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	354	355	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	345	346	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	324	328	anti-parallel
Strand 3	B	358	362	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	15	first strand
Strand 2	B	37	40	parallel
Strand 3	B	69	71	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	96	99	parallel
Strand 3	B	133	136	parallel
Strand 4	B	175	178	parallel
Strand 5	B	205	209	parallel
Strand 6	B	253	255	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	354	355	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	345	346	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	324	328	anti-parallel
Strand 3	C	358	362	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	15	first strand
Strand 2	C	37	40	parallel
Strand 3	C	69	71	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	96	99	parallel
Strand 3	C	133	137	parallel
Strand 4	C	175	179	parallel
Strand 5	C	205	209	parallel
Strand 6	C	253	255	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	354	355	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	345	346	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	324	328	anti-parallel
Strand 3	D	358	362	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	15	first strand
Strand 2	D	37	40	parallel
Strand 3	D	69	71	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	75	first strand
Strand 2	D	96	99	parallel
Strand 3	D	133	136	parallel
Strand 4	D	175	178	parallel
Strand 5	D	205	209	parallel
Strand 6	D	253	255	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	333	first strand
Strand 2	D	354	355	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	345	346	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L0F

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L0F