Analysis of interatomic Contacts of Structural Units in PDB entry:
6L0Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L0Q entry

There are 4 chains in PDB entry 6L0Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLU 383
B	ALA 2	GLU 383
C	ALA 2	GLU 383
D	ALA 2	GLU 383

There are 84 helices in PDB entry 6L0Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	10	Right-handed 310
Helix 2	AA2	A	11	16	Right-handed alpha
Helix 3	AA3	A	20	32	Right-handed alpha
Helix 4	AA4	A	43	54	Right-handed alpha
Helix 5	AA5	A	86	94	Right-handed alpha
Helix 6	AA6	A	118	120	Right-handed 310
Helix 7	AA7	A	127	139	Right-handed alpha
Helix 8	AA8	A	154	167	Right-handed alpha
Helix 9	AA9	A	180	190	Right-handed alpha
Helix 10	AB1	A	203	205	Right-handed 310
Helix 11	AB2	A	206	218	Right-handed alpha
Helix 12	AB3	A	227	237	Right-handed alpha
Helix 13	AB4	A	237	250	Right-handed alpha
Helix 14	AB5	A	263	277	Right-handed alpha
Helix 15	AB6	A	298	302	Right-handed 310
Helix 16	AB7	A	304	309	Right-handed alpha
Helix 17	AB8	A	319	335	Right-handed alpha
Helix 18	AB9	A	339	356	Right-handed alpha
Helix 19	AC1	A	370	373	Right-handed 310
Helix 20	AC2	A	374	383	Right-handed alpha
Helix 21	AC3	B	7	10	Right-handed 310
Helix 22	AC4	B	11	16	Right-handed alpha
Helix 23	AC5	B	21	32	Right-handed alpha
Helix 24	AC6	B	39	42	Right-handed 310
Helix 25	AC7	B	43	54	Right-handed alpha
Helix 26	AC8	B	68	72	Right-handed alpha
Helix 27	AC9	B	73	76	Right-handed 310
Helix 28	AD1	B	86	94	Right-handed alpha
Helix 29	AD2	B	118	120	Right-handed 310
Helix 30	AD3	B	127	139	Right-handed alpha
Helix 31	AD4	B	154	167	Right-handed alpha
Helix 32	AD5	B	180	190	Right-handed alpha
Helix 33	AD6	B	203	205	Right-handed 310
Helix 34	AD7	B	206	218	Right-handed alpha
Helix 35	AD8	B	227	237	Right-handed alpha
Helix 36	AD9	B	237	250	Right-handed alpha
Helix 37	AE1	B	263	277	Right-handed alpha
Helix 38	AE2	B	298	302	Right-handed 310
Helix 39	AE3	B	304	309	Right-handed alpha
Helix 40	AE4	B	319	335	Right-handed alpha
Helix 41	AE5	B	339	355	Right-handed alpha
Helix 42	AE6	B	370	373	Right-handed 310
Helix 43	AE7	B	374	383	Right-handed alpha
Helix 44	AE8	C	7	10	Right-handed 310
Helix 45	AE9	C	11	16	Right-handed alpha
Helix 46	AF1	C	21	32	Right-handed alpha
Helix 47	AF2	C	39	42	Right-handed 310
Helix 48	AF3	C	43	53	Right-handed alpha
Helix 49	AF4	C	86	94	Right-handed alpha
Helix 50	AF5	C	127	139	Right-handed alpha
Helix 51	AF6	C	154	167	Right-handed alpha
Helix 52	AF7	C	180	190	Right-handed alpha
Helix 53	AF8	C	203	205	Right-handed 310
Helix 54	AF9	C	206	218	Right-handed alpha
Helix 55	AG1	C	227	237	Right-handed alpha
Helix 56	AG2	C	237	250	Right-handed alpha
Helix 57	AG3	C	263	277	Right-handed alpha
Helix 58	AG4	C	298	302	Right-handed 310
Helix 59	AG5	C	304	309	Right-handed alpha
Helix 60	AG6	C	319	335	Right-handed alpha
Helix 61	AG7	C	339	356	Right-handed alpha
Helix 62	AG8	C	370	373	Right-handed 310
Helix 63	AG9	C	374	383	Right-handed alpha
Helix 64	AH1	D	7	10	Right-handed 310
Helix 65	AH2	D	11	16	Right-handed alpha
Helix 66	AH3	D	20	32	Right-handed alpha
Helix 67	AH4	D	39	42	Right-handed 310
Helix 68	AH5	D	43	53	Right-handed alpha
Helix 69	AH6	D	86	94	Right-handed alpha
Helix 70	AH7	D	118	120	Right-handed 310
Helix 71	AH8	D	127	139	Right-handed alpha
Helix 72	AH9	D	154	168	Right-handed alpha
Helix 73	AI1	D	180	190	Right-handed alpha
Helix 74	AI2	D	203	205	Right-handed 310
Helix 75	AI3	D	206	218	Right-handed alpha
Helix 76	AI4	D	227	237	Right-handed alpha
Helix 77	AI5	D	237	249	Right-handed alpha
Helix 78	AI6	D	263	277	Right-handed alpha
Helix 79	AI7	D	298	302	Right-handed 310
Helix 80	AI8	D	303	309	Right-handed alpha
Helix 81	AI9	D	319	335	Right-handed alpha
Helix 82	AJ1	D	339	355	Right-handed alpha
Helix 83	AJ2	D	370	373	Right-handed 310
Helix 84	AJ3	D	374	383	Right-handed alpha

There are 16 sheets in PDB entry 6L0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	57	59	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	66	67	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	99	101	parallel
Strand 3	B	110	116	anti-parallel
Strand 4	B	361	367	parallel
Strand 5	B	253	258	parallel
Strand 6	B	281	287	parallel
Strand 7	B	314	318	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	318	first strand
Strand 2	A	281	287	parallel
Strand 3	A	253	258	parallel
Strand 4	A	361	367	parallel
Strand 5	A	110	116	parallel
Strand 6	A	99	101	anti-parallel
Strand 7	B	83	84	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	197	first strand
Strand 2	A	170	176	parallel
Strand 3	A	147	151	parallel
Strand 4	A	220	221	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	57	59	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	66	67	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	197	first strand
Strand 2	B	170	176	parallel
Strand 3	B	147	151	parallel
Strand 4	B	220	221	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	57	59	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	66	67	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	D	99	101	parallel
Strand 3	D	110	116	anti-parallel
Strand 4	D	361	367	parallel
Strand 5	D	253	258	parallel
Strand 6	D	281	287	parallel
Strand 7	D	314	318	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	318	first strand
Strand 2	C	281	287	parallel
Strand 3	C	253	258	parallel
Strand 4	C	361	367	parallel
Strand 5	C	110	116	parallel
Strand 6	C	99	101	anti-parallel
Strand 7	D	83	84	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	197	first strand
Strand 2	C	170	176	parallel
Strand 3	C	147	151	parallel
Strand 4	C	220	221	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	57	59	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	66	67	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	197	first strand
Strand 2	D	170	176	parallel
Strand 3	D	147	151	parallel
Strand 4	D	220	221	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L0Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L0Q