Analysis of interatomic Contacts of Structural Units in PDB entry:
6L1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L1D entry

There are 2 chains in PDB entry 6L1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6LEU 205
B
 ASP 6LEU 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6L1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 23Right-handed alpha
Helix 2
AA2
A
24 29Right-handed 310
Helix 3
AA3
A
62 71Right-handed alpha
Helix 4
AA4
A
73 80Right-handed alpha
Helix 5
AA5
A
182 205Right-handed alpha
Helix 6
AA6
B
7 23Right-handed alpha
Helix 7
AA7
B
24 29Right-handed 310
Helix 8
AA8
B
62 71Right-handed alpha
Helix 9
AA9
B
73 80Right-handed alpha
Helix 10
AB1
B
182 205Right-handed alpha
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There are 6 sheets in PDB entry 6L1D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
51 59anti-parallel
Strand 4
A
167 173anti-parallel
Strand 5
A
153 159anti-parallel
Strand 6
A
128 135anti-parallel
Strand 7
A
114 125anti-parallel
Strand 8
A
96 103anti-parallel
Strand 9
A
83 91anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
39 44anti-parallel
Strand 3
A
51 59anti-parallel
Strand 4
A
167 173anti-parallel
Strand 5
A
153 159anti-parallel
Strand 6
A
128 135anti-parallel
Strand 7
A
114 125anti-parallel
Strand 8
A
146 147parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
175 176anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
39 44anti-parallel
Strand 3
B
51 59anti-parallel
Strand 4
B
167 173anti-parallel
Strand 5
B
153 159anti-parallel
Strand 6
B
128 135anti-parallel
Strand 7
B
114 125anti-parallel
Strand 8
B
96 103anti-parallel
Strand 9
B
83 92anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
39 44anti-parallel
Strand 3
B
51 59anti-parallel
Strand 4
B
167 173anti-parallel
Strand 5
B
153 159anti-parallel
Strand 6
B
128 135anti-parallel
Strand 7
B
114 125anti-parallel
Strand 8
B
146 147parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
175 176anti-parallel
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