Analysis of interatomic Contacts of Structural Units in PDB entry:
6L1Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L1Q entry

There are 3 chains in PDB entry 6L1Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 6ALA 272
A
 SER 6ALA 272
B
 SER 6ALA 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6L1Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
9 13Right-handed 310
Helix 2
AA2
C
25 36Right-handed alpha
Helix 3
AA3
C
49 61Right-handed alpha
Helix 4
AA4
C
76 80Right-handed alpha
Helix 5
AA5
C
95 103Right-handed alpha
Helix 6
AA6
C
111 115Right-handed 310
Helix 7
AA7
C
116 128Right-handed 310
Helix 8
AA8
C
166 171Right-handed alpha
Helix 9
AA9
C
182 195Right-handed alpha
Helix 10
AB1
C
197 214Right-handed alpha
Helix 11
AB2
C
224 237Right-handed alpha
Helix 12
AB3
C
240 250Right-handed alpha
Helix 13
AB4
C
256 271Right-handed alpha
Helix 14
AB5
A
25 36Right-handed alpha
Helix 15
AB6
A
49 62Right-handed alpha
Helix 16
AB7
A
75 80Right-handed alpha
Helix 17
AB8
A
95 104Right-handed alpha
Helix 18
AB9
A
111 115Right-handed 310
Helix 19
AC1
A
116 121Right-handed alpha
Helix 20
AC2
A
122 127Right-handed 310
Helix 21
AC3
A
166 171Right-handed alpha
Helix 22
AC4
A
182 195Right-handed alpha
Helix 23
AC5
A
197 214Right-handed alpha
Helix 24
AC6
A
224 237Right-handed alpha
Helix 25
AC7
A
240 250Right-handed alpha
Helix 26
AC8
A
256 271Right-handed alpha
Helix 27
AC9
B
9 13Right-handed 310
Helix 28
AD1
B
25 36Right-handed alpha
Helix 29
AD2
B
49 62Right-handed alpha
Helix 30
AD3
B
75 80Right-handed alpha
Helix 31
AD4
B
95 104Right-handed alpha
Helix 32
AD5
B
111 115Right-handed 310
Helix 33
AD6
B
117 121Right-handed 310
Helix 34
AD7
B
122 127Right-handed alpha
Helix 35
AD8
B
166 171Right-handed alpha
Helix 36
AD9
B
182 195Right-handed alpha
Helix 37
AE1
B
197 214Right-handed alpha
Helix 38
AE2
B
224 238Right-handed alpha
Helix 39
AE3
B
240 250Right-handed alpha
Helix 40
AE4
B
256 271Right-handed alpha
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There are 9 sheets in PDB entry 6L1Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 69first strand
Strand 2
C
106 110parallel
Strand 3
C
149 154parallel
Strand 4
C
40 43parallel
Strand 5
C
174 177parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 84first strand
Strand 2
C
91 94anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 135first strand
Strand 2
C
140 143anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 69first strand
Strand 2
A
106 110parallel
Strand 3
A
149 154parallel
Strand 4
A
40 43parallel
Strand 5
A
174 177parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
89 94anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
140 143anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 69first strand
Strand 2
B
106 110parallel
Strand 3
B
149 154parallel
Strand 4
B
40 43parallel
Strand 5
B
174 177parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 85first strand
Strand 2
B
90 94anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 135first strand
Strand 2
B
140 143anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il