Analysis of interatomic Contacts of Structural Units in PDB entry:
6L1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L1Y entry

There are 2 chains in PDB entry 6L1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 45ILE 490
C
 LYS 1LEU 177
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6L1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 73Right-handed alpha
Helix 2
AA2
A
98 116Right-handed alpha
Helix 3
AA3
A
335 353Right-handed alpha
Helix 4
AA4
A
367 372Right-handed alpha
Helix 5
AA5
A
386 390Right-handed 310
Helix 6
AA6
A
473 483Right-handed alpha
Helix 7
AA7
C
51 53Right-handed 310
Helix 8
AA8
C
58 62Right-handed 310
Helix 9
AA9
C
75 79Right-handed 310
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There are 10 sheets in PDB entry 6L1Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
485 489anti-parallel
Strand 3
A
223 228anti-parallel
Strand 4
A
242 245anti-parallel
Strand 5
A
83 85anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 76first strand
Strand 2
A
53 56parallel
Strand 3
A
216 218anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 94first strand
Strand 2
A
236 239anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
120 122anti-parallel
Strand 3
A
431 433anti-parallel
Strand 4
A
422 424anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
442 455anti-parallel
Strand 3
A
284 298anti-parallel
Strand 4
A
464 469first strand
Strand 5
A
357 360parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
284 298anti-parallel
Strand 3
A
442 455anti-parallel
Strand 4
A
328 334first strand
Strand 5
A
412 420anti-parallel
Strand 6
A
380 384anti-parallel
Strand 7
A
373 377anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
90 102parallel
Strand 3
C
80 85anti-parallel
Strand 4
C
27 29anti-parallel
Strand 5
C
35 40anti-parallel
Strand 6
C
43 46anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
90 102parallel
Strand 3
C
115 119anti-parallel
Strand 4
C
143 145anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 14first strand
Strand 2
C
69 71anti-parallel
Strand 3
C
55 56anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
137 140first strand
Strand 2
C
127 131anti-parallel
Strand 3
C
155 162anti-parallel
Strand 4
C
167 174anti-parallel
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