Analysis of interatomic Contacts of Structural Units in PDB entry:
6L25


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L25 entry

There are 2 chains in PDB entry 6L25 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LEU 255
B
 MSE 1ASN 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6L25. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
17 28Right-handed alpha
Helix 3
AA3
A
39 53Right-handed alpha
Helix 4
AA4
A
63 70Right-handed 310
Helix 5
AA5
A
71 82Right-handed alpha
Helix 6
AA6
A
103 122Right-handed alpha
Helix 7
AA7
A
132 143Right-handed alpha
Helix 8
AA8
A
144 148Right-handed 310
Helix 9
AA9
A
158 168Right-handed alpha
Helix 10
AB1
A
176 181Right-handed 310
Helix 11
AB2
A
185 194Right-handed alpha
Helix 12
AB3
A
195 197Right-handed 310
Helix 13
AB4
A
219 221Right-handed 310
Helix 14
AB5
A
222 235Right-handed alpha
Helix 15
AB6
A
237 253Right-handed alpha
Helix 16
AB7
B
11 15Right-handed 310
Helix 17
AB8
B
17 28Right-handed alpha
Helix 18
AB9
B
39 53Right-handed alpha
Helix 19
AC1
B
63 70Right-handed 310
Helix 20
AC2
B
71 82Right-handed alpha
Helix 21
AC3
B
103 122Right-handed alpha
Helix 22
AC4
B
132 143Right-handed alpha
Helix 23
AC5
B
144 148Right-handed 310
Helix 24
AC6
B
158 168Right-handed alpha
Helix 25
AC7
B
176 181Right-handed 310
Helix 26
AC8
B
184 194Right-handed alpha
Helix 27
AC9
B
195 197Right-handed 310
Helix 28
AD1
B
219 221Right-handed 310
Helix 29
AD2
B
222 235Right-handed alpha
Helix 30
AD3
B
237 253Right-handed alpha
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There are 2 sheets in PDB entry 6L25. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
30 37parallel
Strand 3
A
56 60parallel
Strand 4
A
87 96parallel
Strand 5
A
125 130parallel
Strand 6
A
150 152parallel
Strand 7
A
172 175parallel
Strand 8
A
199 201parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
30 37parallel
Strand 3
B
56 60parallel
Strand 4
B
87 96parallel
Strand 5
B
125 130parallel
Strand 6
B
150 152parallel
Strand 7
B
172 175parallel
Strand 8
B
199 201parallel
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