Analysis of interatomic Contacts of Structural Units in PDB entry:
6L2G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L2G entry

There are 8 chains in PDB entry 6L2G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 36	VAL 123
A	ALA 125	VAL 432
B	GLU 36	VAL 123
B	ALA 125	VAL 432
C	GLU 36	VAL 123
C	ALA 125	VAL 432
D	GLU 36	VAL 123
D	ALA 125	VAL 432

There are 66 helices in PDB entry 6L2G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	76	Right-handed alpha
Helix 2	AA2	A	80	82	Right-handed 310
Helix 3	AA3	A	100	108	Right-handed alpha
Helix 4	AA4	A	122	124	Right-handed 310
Helix 5	AA5	A	125	140	Right-handed alpha
Helix 6	AA6	A	163	167	Right-handed 310
Helix 7	AA7	A	192	204	Right-handed alpha
Helix 8	AA8	A	207	228	Right-handed alpha
Helix 9	AA9	A	259	266	Right-handed 310
Helix 10	AB1	A	297	305	Right-handed alpha
Helix 11	AB2	A	323	328	Right-handed 310
Helix 12	AB3	A	329	343	Right-handed alpha
Helix 13	AB4	A	345	347	Right-handed 310
Helix 14	AB5	A	358	369	Right-handed alpha
Helix 15	AB6	A	381	386	Right-handed alpha
Helix 16	AB7	A	388	402	Right-handed alpha
Helix 17	AB8	B	61	78	Right-handed alpha
Helix 18	AB9	B	80	82	Right-handed 310
Helix 19	AC1	B	100	109	Right-handed alpha
Helix 20	AC2	B	122	124	Right-handed 310
Helix 21	AC3	B	125	140	Right-handed alpha
Helix 22	AC4	B	163	167	Right-handed 310
Helix 23	AC5	B	177	182	Right-handed alpha
Helix 24	AC6	B	192	204	Right-handed alpha
Helix 25	AC7	B	207	228	Right-handed alpha
Helix 26	AC8	B	259	264	Right-handed alpha
Helix 27	AC9	B	298	305	Right-handed alpha
Helix 28	AD1	B	323	328	Right-handed 310
Helix 29	AD2	B	329	342	Right-handed alpha
Helix 30	AD3	B	345	347	Right-handed 310
Helix 31	AD4	B	358	370	Right-handed alpha
Helix 32	AD5	B	381	386	Right-handed alpha
Helix 33	AD6	B	391	402	Right-handed alpha
Helix 34	AD7	C	61	78	Right-handed alpha
Helix 35	AD8	C	80	82	Right-handed 310
Helix 36	AD9	C	100	109	Right-handed alpha
Helix 37	AE1	C	122	124	Right-handed 310
Helix 38	AE2	C	125	140	Right-handed alpha
Helix 39	AE3	C	163	167	Right-handed 310
Helix 40	AE4	C	178	184	Right-handed alpha
Helix 41	AE5	C	192	204	Right-handed alpha
Helix 42	AE6	C	207	228	Right-handed alpha
Helix 43	AE7	C	259	264	Right-handed alpha
Helix 44	AE8	C	298	305	Right-handed alpha
Helix 45	AE9	C	323	328	Right-handed 310
Helix 46	AF1	C	329	343	Right-handed alpha
Helix 47	AF2	C	345	347	Right-handed 310
Helix 48	AF3	C	358	369	Right-handed alpha
Helix 49	AF4	C	381	386	Right-handed alpha
Helix 50	AF5	C	388	402	Right-handed alpha
Helix 51	AF6	D	61	78	Right-handed alpha
Helix 52	AF7	D	80	82	Right-handed 310
Helix 53	AF8	D	100	109	Right-handed alpha
Helix 54	AF9	D	122	124	Right-handed 310
Helix 55	AG1	D	125	140	Right-handed alpha
Helix 56	AG2	D	163	167	Right-handed 310
Helix 57	AG3	D	193	204	Right-handed alpha
Helix 58	AG4	D	207	228	Right-handed alpha
Helix 59	AG5	D	261	265	Right-handed 310
Helix 60	AG6	D	298	305	Right-handed alpha
Helix 61	AG7	D	323	329	Right-handed 310
Helix 62	AG8	D	330	343	Right-handed alpha
Helix 63	AG9	D	345	347	Right-handed 310
Helix 64	AH1	D	358	370	Right-handed alpha
Helix 65	AH2	D	381	386	Right-handed alpha
Helix 66	AH3	D	388	403	Right-handed alpha

There are 14 sheets in PDB entry 6L2G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	A	287	296	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	84	90	parallel
Strand 5	A	116	121	parallel
Strand 6	B	116	121	anti-parallel
Strand 7	B	84	90	parallel
Strand 8	B	145	153	parallel
Strand 9	B	287	297	anti-parallel
Strand 10	B	51	52	anti-parallel

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There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	A	349	354	parallel
Strand 3	A	409	416	parallel
Strand 4	A	420	428	anti-parallel
Strand 5	A	312	321	anti-parallel
Strand 6	A	41	47	anti-parallel
Strand 7	A	287	296	anti-parallel
Strand 8	A	145	153	anti-parallel
Strand 9	A	84	90	parallel
Strand 10	A	116	121	parallel
Strand 11	B	116	121	anti-parallel
Strand 12	B	84	90	parallel
Strand 13	B	145	153	parallel
Strand 14	B	287	297	anti-parallel
Strand 15	B	40	47	anti-parallel
Strand 16	B	312	321	anti-parallel
Strand 17	B	420	428	anti-parallel
Strand 18	B	409	416	anti-parallel
Strand 19	B	349	354	parallel
Strand 20	B	375	376	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	161	first strand
Strand 2	B	159	161	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	D	173	175	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	247	249	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	C	173	175	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	240	first strand
Strand 2	B	247	249	anti-parallel

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There are 20 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	376	first strand
Strand 2	C	349	354	parallel
Strand 3	C	409	416	parallel
Strand 4	C	420	428	anti-parallel
Strand 5	C	312	321	anti-parallel
Strand 6	C	40	47	anti-parallel
Strand 7	C	287	297	anti-parallel
Strand 8	C	145	153	anti-parallel
Strand 9	C	84	90	parallel
Strand 10	C	116	121	parallel
Strand 11	D	116	121	anti-parallel
Strand 12	D	84	90	parallel
Strand 13	D	145	153	parallel
Strand 14	D	287	297	anti-parallel
Strand 15	D	40	42	anti-parallel
Strand 16	D	312	321	anti-parallel
Strand 17	D	420	428	anti-parallel
Strand 18	D	409	416	anti-parallel
Strand 19	D	349	354	parallel
Strand 20	D	375	376	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	287	297	anti-parallel
Strand 3	C	145	153	anti-parallel
Strand 4	C	84	90	parallel
Strand 5	C	116	121	parallel
Strand 6	D	116	121	anti-parallel
Strand 7	D	84	90	parallel
Strand 8	D	145	153	parallel
Strand 9	D	287	297	anti-parallel
Strand 10	D	51	52	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	287	297	anti-parallel
Strand 3	D	40	42	anti-parallel
Strand 4	D	312	321	anti-parallel
Strand 5	D	420	428	anti-parallel
Strand 6	D	409	416	anti-parallel
Strand 7	D	349	354	parallel
Strand 8	D	375	376	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	161	first strand
Strand 2	D	159	161	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	246	249	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	186	first strand
Strand 2	D	191	192	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	241	first strand
Strand 2	D	246	249	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L2G

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L2G