Analysis of interatomic Contacts of Structural Units in PDB entry:
6L2T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L2T entry

There are 3 chains in PDB entry 6L2T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 8	GLN 636
B	CYS 8	GLN 636
C	MET 1	GLN 636

There are 30 helices in PDB entry 6L2T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	22	Right-handed alpha
Helix 2	AA2	A	22	40	Right-handed alpha
Helix 3	AA3	A	138	142	Right-handed 310
Helix 4	AA4	A	183	187	Right-handed 310
Helix 5	AA5	A	208	213	Right-handed alpha
Helix 6	AA6	A	220	228	Right-handed alpha
Helix 7	AA7	A	271	276	Right-handed 310
Helix 8	AA8	A	422	426	Right-handed 310
Helix 9	AA9	A	474	476	Right-handed 310
Helix 10	AB1	A	555	560	Right-handed alpha
Helix 11	AB2	A	560	566	Right-handed alpha
Helix 12	AB3	B	17	22	Right-handed alpha
Helix 13	AB4	B	22	40	Right-handed alpha
Helix 14	AB5	B	51	55	Right-handed 310
Helix 15	AB6	B	138	142	Right-handed 310
Helix 16	AB7	B	183	186	Right-handed 310
Helix 17	AB8	B	205	210	Right-handed alpha
Helix 18	AB9	B	220	228	Right-handed alpha
Helix 19	AC1	B	271	276	Right-handed alpha
Helix 20	AC2	B	561	566	Right-handed alpha
Helix 21	AC3	C	17	22	Right-handed alpha
Helix 22	AC4	C	22	39	Right-handed alpha
Helix 23	AC5	C	50	55	Right-handed 310
Helix 24	AC6	C	183	188	Right-handed alpha
Helix 25	AC7	C	220	228	Right-handed alpha
Helix 26	AC8	C	271	278	Right-handed alpha
Helix 27	AC9	C	422	426	Right-handed 310
Helix 28	AD1	C	474	476	Right-handed 310
Helix 29	AD2	C	554	560	Right-handed alpha
Helix 30	AD3	C	561	566	Right-handed alpha

There are 26 sheets in PDB entry 6L2T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	104	108	anti-parallel
Strand 3	A	410	414	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	204	first strand
Strand 2	A	190	195	anti-parallel
Strand 3	A	355	360	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	234	first strand
Strand 2	A	313	314	anti-parallel
Strand 3	B	306	309	anti-parallel
Strand 4	B	240	242	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	306	309	anti-parallel
Strand 3	C	313	315	anti-parallel
Strand 4	C	232	234	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	441	first strand
Strand 2	A	626	634	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	472	first strand
Strand 2	A	621	622	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	495	first strand
Strand 2	A	531	532	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	539	544	first strand
Strand 2	A	547	554	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	418	419	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	104	110	anti-parallel
Strand 3	B	407	414	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	375	376	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	179	first strand
Strand 2	B	368	371	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	204	first strand
Strand 2	B	188	195	anti-parallel
Strand 3	B	355	361	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	234	first strand
Strand 2	B	313	315	anti-parallel
Strand 3	C	306	309	anti-parallel
Strand 4	C	241	242	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	472	first strand
Strand 2	B	621	626	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	504	505	first strand
Strand 2	B	520	521	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	547	550	first strand
Strand 2	B	541	544	anti-parallel
Strand 3	B	607	609	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	418	419	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	327	328	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	369	371	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	204	first strand
Strand 2	C	190	195	anti-parallel
Strand 3	C	359	360	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	434	436	first strand
Strand 2	C	631	633	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	446	first strand
Strand 2	C	621	623	anti-parallel
Strand 3	C	471	472	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	582	first strand
Strand 2	C	463	468	anti-parallel
Strand 3	C	627	629	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	494	first strand
Strand 2	C	532	534	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	543	first strand
Strand 2	C	607	609	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L2T

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L2T