Analysis of interatomic Contacts of Structural Units in PDB entry:
6L35

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L35 entry

There are 17 chains in PDB entry 6L35 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 9	GLY 750
B	ALA 2	GLY 734
C	ALA 2	TYR 81
D	THR 77	LEU 217
E	GLY 72	ALA 133
F	ASP 86	SER 244
G	GLU 58	PHE 155
H	SER 51	LYS 140
I	MET 1	GLU 34
J	MET 1	LEU 41
K	TYR 50	ALA 128
L	LYS 63	TYR 221
M	SER 3	TYR 31
2	ASN 63	SER 268
6	GLU 50	PRO 241
3	PHE 102	ASN 314
5	ARG 72	ILE 273

There are131 helices in PDB entry 6L35. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	28	Right-handed alpha
Helix 2	AA2	A	43	52	Right-handed alpha
Helix 3	AA3	A	55	60	Right-handed alpha
Helix 4	AA4	A	62	95	Right-handed alpha
Helix 5	AA5	A	97	104	Right-handed alpha
Helix 6	AA6	A	120	125	Right-handed 310
Helix 7	AA7	A	140	149	Right-handed alpha
Helix 8	AA8	A	153	180	Right-handed alpha
Helix 9	AA9	A	184	189	Right-handed alpha
Helix 10	AB1	A	190	201	Right-handed alpha
Helix 11	AB2	A	202	227	Right-handed alpha
Helix 12	AB3	A	243	249	Right-handed alpha
Helix 13	AB4	A	251	257	Right-handed 310
Helix 14	AB5	A	258	263	Right-handed alpha
Helix 15	AB6	A	265	269	Right-handed 310
Helix 16	AB7	A	287	306	Right-handed alpha
Helix 17	AB8	A	320	325	Right-handed alpha
Helix 18	AB9	A	346	371	Right-handed alpha
Helix 19	AC1	A	380	413	Right-handed alpha
Helix 20	AC2	A	423	429	Right-handed alpha
Helix 21	AC3	A	430	462	Right-handed alpha
Helix 22	AC4	A	464	468	Right-handed 310
Helix 23	AC5	A	478	490	Right-handed alpha
Helix 24	AC6	A	527	554	Right-handed alpha
Helix 25	AC7	A	563	568	Right-handed alpha
Helix 26	AC8	A	585	616	Right-handed alpha
Helix 27	AC9	A	622	624	Right-handed 310
Helix 28	AD1	A	633	638	Right-handed alpha
Helix 29	AD2	A	640	647	Right-handed alpha
Helix 30	AD3	A	648	653	Right-handed alpha
Helix 31	AD4	A	664	687	Right-handed alpha
Helix 32	AD5	A	688	706	Right-handed alpha
Helix 33	AD6	A	718	750	Right-handed alpha
Helix 34	AD7	B	18	27	Right-handed alpha
Helix 35	AD8	B	28	29	Right-handed 310
Helix 36	AD9	B	30	34	Right-handed 310
Helix 37	AE1	B	40	72	Right-handed alpha
Helix 38	AE2	B	73	79	Right-handed alpha
Helix 39	AE3	B	97	105	Right-handed alpha
Helix 40	AE4	B	119	127	Right-handed alpha
Helix 41	AE5	B	131	156	Right-handed alpha
Helix 42	AE6	B	157	162	Right-handed 310
Helix 43	AE7	B	164	169	Right-handed alpha
Helix 44	AE8	B	170	197	Right-handed alpha
Helix 45	AE9	B	197	204	Right-handed alpha
Helix 46	AF1	B	208	212	Right-handed 310
Helix 47	AF2	B	222	227	Right-handed alpha
Helix 48	AF3	B	229	235	Right-handed 310
Helix 49	AF4	B	269	289	Right-handed alpha
Helix 50	AF5	B	300	307	Right-handed alpha
Helix 51	AF6	B	321	329	Right-handed alpha
Helix 52	AF7	B	329	355	Right-handed alpha
Helix 53	AF8	B	366	397	Right-handed alpha
Helix 54	AF9	B	406	414	Right-handed alpha
Helix 55	AG1	B	414	446	Right-handed alpha
Helix 56	AG2	B	448	452	Right-handed 310
Helix 57	AG3	B	457	467	Right-handed alpha
Helix 58	AG4	B	483	489	Right-handed alpha
Helix 59	AG5	B	493	502	Right-handed alpha
Helix 60	AG6	B	513	540	Right-handed alpha
Helix 61	AG7	B	549	553	Right-handed 310
Helix 62	AG8	B	571	604	Right-handed alpha
Helix 63	AG9	B	605	613	Right-handed alpha
Helix 64	AH1	B	616	623	Right-handed alpha
Helix 65	AH2	B	625	629	Right-handed 310
Helix 66	AH3	B	631	633	Right-handed 310
Helix 67	AH4	B	643	666	Right-handed alpha
Helix 68	AH5	B	667	684	Right-handed alpha
Helix 69	AH6	B	701	731	Right-handed alpha
Helix 70	AH7	C	15	21	Right-handed alpha
Helix 71	AH8	C	44	48	Right-handed 310
Helix 72	AH9	C	73	78	Right-handed alpha
Helix 73	AI1	D	99	104	Right-handed alpha
Helix 74	AI2	D	140	155	Right-handed alpha
Helix 75	AI3	D	197	201	Right-handed 310
Helix 76	AI4	E	126	130	Right-handed 310
Helix 77	AI5	F	86	90	Right-handed 310
Helix 78	AI6	F	94	96	Right-handed 310
Helix 79	AI7	F	98	115	Right-handed alpha
Helix 80	AI8	F	121	145	Right-handed alpha
Helix 81	AI9	F	161	165	Right-handed 310
Helix 82	AJ1	F	168	195	Right-handed alpha
Helix 83	AJ2	F	200	205	Right-handed alpha
Helix 84	AJ3	F	207	218	Right-handed alpha
Helix 85	AJ4	F	221	231	Right-handed alpha
Helix 86	AJ5	G	63	79	Right-handed alpha
Helix 87	AJ6	G	80	91	Right-handed alpha
Helix 88	AJ7	G	101	106	Right-handed alpha
Helix 89	AJ8	G	125	147	Right-handed alpha
Helix 90	AJ9	H	78	87	Right-handed alpha
Helix 91	AK1	H	90	94	Right-handed 310
Helix 92	AK2	H	95	116	Right-handed alpha
Helix 93	AK3	I	6	15	Right-handed alpha
Helix 94	AK4	I	16	31	Right-handed alpha
Helix 95	AK5	J	2	9	Right-handed alpha
Helix 96	AK6	J	10	33	Right-handed alpha
Helix 97	AK7	K	53	68	Right-handed alpha
Helix 98	AK8	K	106	126	Right-handed alpha
Helix 99	AK9	L	69	73	Right-handed 310
Helix 100	AL1	L	86	95	Right-handed alpha
Helix 101	AL2	L	104	121	Right-handed alpha
Helix 102	AL3	L	121	126	Right-handed alpha
Helix 103	AL4	L	135	163	Right-handed alpha
Helix 104	AL5	L	184	187	Right-handed 310
Helix 105	AL6	L	188	216	Right-handed alpha
Helix 106	AL7	M	6	30	Right-handed alpha
Helix 107	AL8	2	96	130	Right-handed alpha
Helix 108	AL9	2	149	174	Right-handed alpha
Helix 109	AM1	2	198	203	Right-handed alpha
Helix 110	AM2	2	216	244	Right-handed alpha
Helix 111	AM3	2	247	258	Right-handed alpha
Helix 112	AM4	2	263	267	Right-handed 310
Helix 113	AM5	6	79	110	Right-handed alpha
Helix 114	AM6	6	140	160	Right-handed alpha
Helix 115	AM7	6	164	170	Right-handed alpha
Helix 116	AM8	6	172	176	Right-handed 310
Helix 117	AM9	6	186	214	Right-handed alpha
Helix 118	AN1	6	220	227	Right-handed alpha
Helix 119	AN2	6	234	238	Right-handed 310
Helix 120	AN3	3	140	159	Right-handed alpha
Helix 121	AN4	3	160	168	Right-handed alpha
Helix 122	AN5	3	196	221	Right-handed alpha
Helix 123	AN6	3	259	288	Right-handed alpha
Helix 124	AN7	3	294	305	Right-handed alpha
Helix 125	AN8	5	103	137	Right-handed alpha
Helix 126	AN9	5	144	149	Right-handed alpha
Helix 127	AO1	5	157	182	Right-handed alpha
Helix 128	AO2	5	208	213	Right-handed alpha
Helix 129	AO3	5	224	252	Right-handed alpha
Helix 130	AO4	5	255	266	Right-handed alpha
Helix 131	AO5	5	267	270	Right-handed 310

There are 12 sheets in PDB entry 6L35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	181	183	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	514	first strand
Strand 2	A	519	521	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	620	first strand
Strand 2	A	626	627	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	193	194	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	138	first strand
Strand 2	D	106	113	anti-parallel
Strand 3	D	159	164	anti-parallel
Strand 4	D	170	172	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	120	first strand
Strand 2	D	126	128	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	80	first strand
Strand 2	E	92	95	anti-parallel
Strand 3	E	108	111	anti-parallel
Strand 4	E	122	125	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	92	first strand
Strand 2	F	147	148	anti-parallel
Strand 3	F	154	155	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	96	first strand
Strand 2	G	99	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L35

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L35