Analysis of interatomic Contacts of Structural Units in PDB entry:
6L3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L3F entry

There is 1 chain in PDB entry 6L3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 425PRO 755
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6L3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
430 433Right-handed 310
Helix 2
AA2
A
434 446Right-handed alpha
Helix 3
AA3
A
448 470Right-handed alpha
Helix 4
AA4
A
479 482Right-handed 310
Helix 5
AA5
A
504 519Right-handed alpha
Helix 6
AA6
A
552 567Right-handed alpha
Helix 7
AA7
A
570 586Right-handed alpha
Helix 8
AA8
A
590 594Right-handed 310
Helix 9
AA9
A
597 612Right-handed alpha
Helix 10
AB1
A
619 623Right-handed 310
Helix 11
AB2
A
641 646Right-handed 310
Helix 12
AB3
A
647 652Right-handed 310
Helix 13
AB4
A
655 670Right-handed alpha
Helix 14
AB5
A
715 720Right-handed 310
Helix 15
AB6
A
723 742Right-handed alpha
Helix 16
AB7
A
744 750Right-handed alpha
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There are 3 sheets in PDB entry 6L3F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 478first strand
Strand 2
A
491 497anti-parallel
Strand 3
A
545 550parallel
Strand 4
A
532 538anti-parallel
Strand 5
A
522 529anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 631first strand
Strand 2
A
634 638anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 687first strand
Strand 2
A
676 679anti-parallel
Strand 3
A
705 707parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il