Analysis of interatomic Contacts of Structural Units in PDB entry:
6L3N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6L3N entry

There are 4 chains in PDB entry 6L3N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	VAL 419
B	VAL 1	PRO 420
C	VAL 1	VAL 419
D	VAL 1	PRO 420

There are 76 helices in PDB entry 6L3N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	31	Right-handed alpha
Helix 2	AA2	A	35	46	Right-handed alpha
Helix 3	AA3	A	60	73	Right-handed alpha
Helix 4	AA4	A	106	113	Right-handed alpha
Helix 5	AA5	A	113	132	Right-handed alpha
Helix 6	AA6	A	134	139	Right-handed alpha
Helix 7	AA7	A	143	146	Right-handed 310
Helix 8	AA8	A	147	169	Right-handed alpha
Helix 9	AA9	A	181	190	Right-handed alpha
Helix 10	AB1	A	194	213	Right-handed alpha
Helix 11	AB2	A	225	233	Right-handed alpha
Helix 12	AB3	A	256	270	Right-handed alpha
Helix 13	AB4	A	286	292	Right-handed 310
Helix 14	AB5	A	293	301	Right-handed alpha
Helix 15	AB6	A	325	335	Right-handed alpha
Helix 16	AB7	A	338	348	Right-handed alpha
Helix 17	AB8	A	363	372	Right-handed alpha
Helix 18	AB9	A	388	401	Right-handed alpha
Helix 19	AC1	A	407	412	Right-handed 310
Helix 20	AC2	B	13	30	Right-handed alpha
Helix 21	AC3	B	35	46	Right-handed alpha
Helix 22	AC4	B	60	73	Right-handed alpha
Helix 23	AC5	B	106	113	Right-handed alpha
Helix 24	AC6	B	113	132	Right-handed alpha
Helix 25	AC7	B	134	139	Right-handed alpha
Helix 26	AC8	B	143	146	Right-handed 310
Helix 27	AC9	B	147	169	Right-handed alpha
Helix 28	AD1	B	181	190	Right-handed alpha
Helix 29	AD2	B	194	213	Right-handed alpha
Helix 30	AD3	B	225	233	Right-handed alpha
Helix 31	AD4	B	256	270	Right-handed alpha
Helix 32	AD5	B	286	291	Right-handed 310
Helix 33	AD6	B	292	301	Right-handed alpha
Helix 34	AD7	B	325	335	Right-handed alpha
Helix 35	AD8	B	338	348	Right-handed alpha
Helix 36	AD9	B	363	372	Right-handed alpha
Helix 37	AE1	B	388	401	Right-handed alpha
Helix 38	AE2	B	407	412	Right-handed 310
Helix 39	AE3	C	13	30	Right-handed alpha
Helix 40	AE4	C	35	46	Right-handed alpha
Helix 41	AE5	C	60	73	Right-handed alpha
Helix 42	AE6	C	106	113	Right-handed alpha
Helix 43	AE7	C	113	132	Right-handed alpha
Helix 44	AE8	C	134	139	Right-handed alpha
Helix 45	AE9	C	143	146	Right-handed 310
Helix 46	AF1	C	147	169	Right-handed alpha
Helix 47	AF2	C	181	190	Right-handed alpha
Helix 48	AF3	C	194	213	Right-handed alpha
Helix 49	AF4	C	225	233	Right-handed alpha
Helix 50	AF5	C	256	270	Right-handed alpha
Helix 51	AF6	C	286	291	Right-handed 310
Helix 52	AF7	C	292	301	Right-handed alpha
Helix 53	AF8	C	325	335	Right-handed alpha
Helix 54	AF9	C	338	348	Right-handed alpha
Helix 55	AG1	C	363	372	Right-handed alpha
Helix 56	AG2	C	388	401	Right-handed alpha
Helix 57	AG3	C	407	412	Right-handed 310
Helix 58	AG4	D	13	30	Right-handed alpha
Helix 59	AG5	D	35	46	Right-handed alpha
Helix 60	AG6	D	60	73	Right-handed alpha
Helix 61	AG7	D	106	113	Right-handed alpha
Helix 62	AG8	D	113	132	Right-handed alpha
Helix 63	AG9	D	134	139	Right-handed alpha
Helix 64	AH1	D	143	146	Right-handed 310
Helix 65	AH2	D	147	169	Right-handed alpha
Helix 66	AH3	D	181	190	Right-handed alpha
Helix 67	AH4	D	194	213	Right-handed alpha
Helix 68	AH5	D	225	233	Right-handed alpha
Helix 69	AH6	D	256	270	Right-handed alpha
Helix 70	AH7	D	286	291	Right-handed 310
Helix 71	AH8	D	292	301	Right-handed alpha
Helix 72	AH9	D	325	335	Right-handed alpha
Helix 73	AI1	D	338	348	Right-handed alpha
Helix 74	AI2	D	363	372	Right-handed alpha
Helix 75	AI3	D	388	401	Right-handed alpha
Helix 76	AI4	D	407	412	Right-handed 310

There are 12 sheets in PDB entry 6L3N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	11	first strand
Strand 2	A	52	58	anti-parallel
Strand 3	A	80	84	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	175	178	parallel
Strand 3	A	90	95	parallel
Strand 4	A	351	356	parallel
Strand 5	A	377	379	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	247	first strand
Strand 2	A	250	255	anti-parallel
Strand 3	A	218	222	anti-parallel
Strand 4	A	274	276	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	11	first strand
Strand 2	B	52	58	anti-parallel
Strand 3	B	80	84	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	314	first strand
Strand 2	B	175	178	parallel
Strand 3	B	90	95	parallel
Strand 4	B	351	356	parallel
Strand 5	B	377	379	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	247	first strand
Strand 2	B	250	255	anti-parallel
Strand 3	B	218	222	anti-parallel
Strand 4	B	274	276	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	11	first strand
Strand 2	C	52	58	anti-parallel
Strand 3	C	80	84	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	175	178	parallel
Strand 3	C	90	95	parallel
Strand 4	C	351	356	parallel
Strand 5	C	377	379	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	247	first strand
Strand 2	C	250	255	anti-parallel
Strand 3	C	218	222	anti-parallel
Strand 4	C	274	276	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	11	first strand
Strand 2	D	52	58	anti-parallel
Strand 3	D	80	84	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	314	first strand
Strand 2	D	175	178	parallel
Strand 3	D	90	95	parallel
Strand 4	D	351	356	parallel
Strand 5	D	377	379	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	247	first strand
Strand 2	D	250	255	anti-parallel
Strand 3	D	218	222	anti-parallel
Strand 4	D	274	276	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6L3N

Analysis of interatomic Contacts of Structural Units in PDB entry:
6L3N