Analysis of interatomic Contacts of Structural Units in PDB entry:
6L3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6L3P entry

There are 2 chains in PDB entry 6L3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2THR 250
B
 SER 2THR 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 6L3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 30Right-handed 310
Helix 2
AA2
A
34 51Right-handed alpha
Helix 3
AA3
A
85 99Right-handed alpha
Helix 4
AA4
A
121 128Right-handed alpha
Helix 5
AA5
A
141 145Right-handed 310
Helix 6
AA6
A
153 160Right-handed alpha
Helix 7
AA7
A
163 174Right-handed alpha
Helix 8
AA8
A
179 185Right-handed alpha
Helix 9
AA9
A
193 210Right-handed alpha
Helix 10
AB1
A
212 227Right-handed alpha
Helix 11
AB2
A
230 250Right-handed alpha
Helix 12
AB3
B
26 30Right-handed 310
Helix 13
AB4
B
34 51Right-handed alpha
Helix 14
AB5
B
71 76Right-handed alpha
Helix 15
AB6
B
85 99Right-handed alpha
Helix 16
AB7
B
121 128Right-handed alpha
Helix 17
AB8
B
142 145Right-handed 310
Helix 18
AB9
B
153 160Right-handed alpha
Helix 19
AC1
B
163 174Right-handed alpha
Helix 20
AC2
B
179 185Right-handed alpha
Helix 21
AC3
B
193 211Right-handed alpha
Helix 22
AC4
B
212 226Right-handed alpha
Helix 23
AC5
B
227 229Right-handed 310
Helix 24
AC6
B
230 248Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6L3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
19 24anti-parallel
Strand 3
A
56 61parallel
Strand 4
A
109 113parallel
Strand 5
A
130 134parallel
Strand 6
A
190 192parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
116 118parallel
Strand 3
A
138 140parallel
Strand 4
A
177 178anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 16first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
56 61parallel
Strand 4
B
109 113parallel
Strand 5
B
130 134parallel
Strand 6
B
190 192parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
116 118parallel
Strand 3
B
138 140parallel
Strand 4
B
176 178anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il